Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G286000.1 | Wheat | cytosol | 91.53 | 91.53 |
| TraesCS1D01G285100.1 | Wheat | cytosol | 91.53 | 88.04 |
| TraesCS1B01G295500.1 | Wheat | cytosol | 90.96 | 87.5 |
| Zm00001d038378_P001 | Maize | cytosol, extracellular | 85.88 | 86.36 |
| GSMUA_Achr9P01690_001 | Banana | cytosol | 81.36 | 80.9 |
| Zm00001d010537_P001 | Maize | cytosol | 85.88 | 78.76 |
| Os01t0838800-02 | Rice | cytosol | 74.01 | 74.01 |
| Os02t0317400-01 | Rice | cytosol | 69.49 | 67.58 |
| KXG22166 | Sorghum | cytosol | 87.01 | 57.04 |
| Os09t0251450-00 | Rice | extracellular | 19.21 | 41.46 |
Protein Annotations
| MapMan:22.3.1.4.4 | Gene3D:3.30.450.60 | EntrezGene:4339020 | ProteinID:AAT39171.1 | EMBL:AB042259 | EMBL:AK059189 |
| EMBL:AK066739 | EMBL:AK104166 | InterPro:AP_mu_sigma_su | ProteinID:BAF17674.1 | ProteinID:BAS94410.1 | ProteinID:EEE63990.1 |
| GO:GO:0000139 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030663 |
| GO:GO:0031410 | InterPro:Longin-like_dom_sf | EnsemblPlantsGene:Os05g0461000 | EnsemblPlants:Os05t0461000-01 | PFAM:PF01217 | PANTHER:PTHR11043 |
| PANTHER:PTHR11043:SF5 | UniProt:Q9MAX5 | SUPFAM:SSF64356 | UniParc:UPI00000A6F22 | RefSeq:XP_015637739.1 | SEG:seg |
Description
COPZ1Clathrin adaptor, sigma subunit/coatomer, zeta subunit domain containing protein. (Os05t0461000-01);Clathrin adaptor, sigma subunit/coatomer, zeta subunit domain containing protein. (Os05t0461000-02)
Coordinates
chr5:-:22641694..22644379
Molecular Weight (calculated)
19370.3 Da
IEP (calculated)
4.359
GRAVY (calculated)
0.206
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MESCPSVKNI LLLDSEGKRV AVKYYTDDWP TLSAKLAFEK SVFVKTQKAT AGAEAEIVMF DGHIVVYKFI QDLHFFVTGG EEENELILAS VLQGFTDAVD
101: IILRNNVDKR TALENLDLIL LCLDEIVDGG IVLETEGSVI AEKVSAHGIE GATSLAEQTI VQALTTAREH LTKSLLM
101: IILRNNVDKR TALENLDLIL LCLDEIVDGG IVLETEGSVI AEKVSAHGIE GATSLAEQTI VQALTTAREH LTKSLLM
001: MSPDSCPLVK KILLLDSEGK RVAVKYYSDD WPTNAAKLSF EKYVFSKTSK TNARTEAEIT LLDSNIIVYK FAQDLHFFVT GGENENELIL ASVLQGFFDA
101: VALLLRSNVE KMEALENLDL IFLCLDEMVD QGVVLETDPN VIAGKVAMQS TEASGSLSEQ TLTQALATAR EHLARSLLT
101: VALLLRSNVE KMEALENLDL IFLCLDEMVD QGVVLETDPN VIAGKVAMQS TEASGSLSEQ TLTQALATAR EHLARSLLT
Arabidopsis Description
SNARE-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRF9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.