Factsheet for Zm00001d038378_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010537_P001	Maize	cytosol	95.45	87.05
Os05t0461000-01	Rice	cytosol	86.36	85.88
TraesCS1A01G286000.1	Wheat	cytosol	84.66	84.18
TraesCS1D01G285100.1	Wheat	cytosol	84.66	80.98
TraesCS1B01G295500.1	Wheat	cytosol	84.09	80.43
GSMUA_Achr9P01690_001	Banana	cytosol	79.55	78.65
KXG22166	Sorghum	cytosol	98.3	64.07
Zm00001d020783_P005	Maize	mitochondrion	69.89	60.59

Protein Annotations

EMBL:AB040668	EnsemblPlants:Zm00001d038378_P001	EnsemblPlants:Zm00001d038378_T001	EnsemblPlantsGene:Zm00001d038378	EntrezGene:542595	Gene3D:3.30.450.60
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0019028	InterPro:AP_mu_sigma_su	InterPro:Longin-like_dom_sf	PANTHER:PTHR11043	PANTHER:PTHR11043:SF5	PFAM:PF01217
ProteinID:AQK86482.1	SUPFAM:SSF64356	UniParc:UPI00000AB5ED	UniProt:Q9MAY9	MapMan:22.3.1.4.4	:

Description

Coatomer subunit zeta-1

Coordinates

chr6:-:155920028..155922496

Molecular Weight (calculated)

19459.4 Da

IEP (calculated)

4.390

GRAVY (calculated)

0.014

Length

176 amino acids

Sequence
(BLAST)

001: METCPSVKNI LLLDSEGKRV AVKYYSDDWP TLSAKLAFEK SVFTKTQKAN AGTEVEIVMF DGQIVVYKFI QDLHFFVTGG EEENELILAS VLQGFSDAVE
101: RLLKNMVDKR TALENLDMIL LCLDEIVDGG IVLETEGREI AEKVSGHGLE GASSAEQTLV NALTQAREHF AKSLLM

Best Arabidopsis Sequence Match ( AT3G09800.1 )
(BLAST)

001: MSPDSCPLVK KILLLDSEGK RVAVKYYSDD WPTNAAKLSF EKYVFSKTSK TNARTEAEIT LLDSNIIVYK FAQDLHFFVT GGENENELIL ASVLQGFFDA
101: VALLLRSNVE KMEALENLDL IFLCLDEMVD QGVVLETDPN VIAGKVAMQS TEASGSLSEQ TLTQALATAR EHLARSLLT

Arabidopsis Description

SNARE-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.