Factsheet for TraesCS4B01G275200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G273800.1	Wheat	mitochondrion	81.86	81.07
TraesCS4A01G030800.1	Wheat	mitochondrion	79.9	79.51
HORVU4Hr1G073070.1	Barley	mitochondrion	67.16	66.5
EER92828	Sorghum	mitochondrion	59.8	58.1
Os03t0159400-01	Rice	mitochondrion	59.8	57.01
Zm00001d027739_P001	Maize	nucleus, plastid	47.06	52.46
GSMUA_Achr3P30930_001	Banana	mitochondrion	42.65	41.43
GSMUA_Achr4P07580_001	Banana	plastid	42.16	40.57
KRH35514	Soybean	plastid	28.92	32.78
KRG91320	Soybean	plastid	27.94	30.0
KRH71408	Soybean	cytosol	28.92	28.92
VIT_05s0020g03520.t01	Wine grape	plastid	31.37	28.7
CDY10106	Canola	cytosol	29.41	27.78
Solyc09g082080.1.1	Tomato	cytosol, mitochondrion	28.43	27.49
AT4G14860.1	Thale cress	plastid	24.51	27.47
CDY42794	Canola	plastid	25.0	27.27
CDY29776	Canola	plastid	25.0	27.13
PGSC0003DMT400049756	Potato	mitochondrion	29.9	26.75
KRH32029	Soybean	cytosol	28.43	26.48
KRH67233	Soybean	nucleus, plastid	31.86	26.0
CDY10024	Canola	nucleus	28.92	25.99
Bra032464.1-P	Field mustard	nucleus, plastid	28.92	25.99
CDY06168	Canola	cytosol, mitochondrion	29.41	25.97
CDY12233	Canola	mitochondrion	29.9	25.85
PGSC0003DMT400082125	Potato	cytosol, mitochondrion	27.45	25.45
Bra005611.1-P	Field mustard	cytosol	29.41	25.32
CDY64911	Canola	cytosol	29.41	25.32
KRG95550	Soybean	mitochondrion, plastid	32.35	25.19
CDY47289	Canola	cytosol	28.92	25.0
AT2G32100.1	Thale cress	nucleus	29.41	24.59
Bra036908.1-P	Field mustard	plastid	25.0	23.83
AT1G05420.2	Thale cress	mitochondrion, plastid	27.94	23.55
TraesCS5B01G187700.1	Wheat	nucleus	25.0	18.82
TraesCS6B01G050100.1	Wheat	nucleus	20.59	17.57

Protein Annotations

EnsemblPlants:TraesCS4B01G275200.1	EnsemblPlantsGene:TraesCS4B01G275200	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C	PANTHER:PTHR33057
PANTHER:PTHR33057:SF21	PFAM:PF04844	PFscan:PS51754	SEG:seg	TIGRFAMs:TIGR01568	MapMan:15.5.37

Description

No Description!

Coordinates

chr4B:-:553338256..553338870

Molecular Weight (calculated)

21284.9 Da

IEP (calculated)

7.986

GRAVY (calculated)

-0.189

Length

204 amino acids

Sequence
(BLAST)

001: MLGCFSRLRR PSSAAPGAPA PVQPPDEAST SAASTSTPAT SPRSSSSSAR FKNACLRDGG RGGDADVAKE CPLSSALAVD SGLSSAIASR RFFLASPGRS
101: NSIVDSSAAH AAAVLGVGAA GVAVPTYSPD PHADFLRSME EMSAALRLDA RRRGDRARLH ELLLCYLALN DKRAHRYIVS AFTDLLLRLT ATDDLDADEQ
201: HGSM

Best Arabidopsis Sequence Match ( AT1G05420.2 )
(BLAST)

001: MLNTYSLTLF LTKTKTMPRV MWKNFHLCFP SNLTKPSSSP SGATSDDPNR PSILLINNFN LLYDDSSAAH RRLSKPLIHD VEPSSTFTAS TSTAANSSSS
101: SASYDDSDNY GFAPDDDSPP PDLTAVLASR RFFFSSPGCS NSITDSPDLR CRDNYDTATR LLTGGTAVKH YVQSPDPYND FRRSMQEMID AVTNAGDLRR
201: YEFLHELLLS YLSLNAADTH KFIIRAFADI LVSLLSDGHR IS

Arabidopsis Description

ATOFP12ovate family protein 12 [Source:TAIR;Acc:AT1G05420]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.