CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95550	Soybean	mitochondrion, plastid	58.4	55.73
KRH32029	Soybean	cytosol	38.0	43.38
KRH71408	Soybean	cytosol	35.2	43.14
KRH35514	Soybean	plastid	27.2	37.78
KRG91320	Soybean	plastid	28.0	36.84
PGSC0003DMT400049756	Potato	mitochondrion	31.2	34.21
GSMUA_Achr4P07580_001	Banana	plastid	28.8	33.96
GSMUA_Achr3P30930_001	Banana	mitochondrion	28.4	33.81
Zm00001d027739_P001	Maize	nucleus, plastid	23.6	32.24
TraesCS4B01G275200.1	Wheat	mitochondrion	26.0	31.86
TraesCS4A01G030800.1	Wheat	mitochondrion	25.6	31.22
HORVU4Hr1G073070.1	Barley	mitochondrion	25.6	31.07
TraesCS4D01G273800.1	Wheat	mitochondrion	25.6	31.07
EER92828	Sorghum	mitochondrion	24.8	29.52
Os03t0159400-01	Rice	mitochondrion	24.8	28.97
KRH09849	Soybean	mitochondrion, nucleus	22.8	22.89
KRH44372	Soybean	nucleus	12.0	15.96
KRH47051	Soybean	nucleus	15.6	13.83

Protein Annotations

EntrezGene:102659610	MapMan:15.5.37	EMBL:ACUP02002047	EnsemblPlantsGene:GLYMA_03G155600	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	UniProt:K7KFA1
EnsemblPlants:KRH67233	ProteinID:KRH67233	ProteinID:KRH67233.1	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844
PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF65	TIGRFAMs:TIGR01568	UniParc:UPI00029622C8	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:37077272..37078425

Molecular Weight (calculated)

27752.1 Da

IEP (calculated)

6.230

GRAVY (calculated)

-0.693

Length

250 amino acids

Sequence
(BLAST)

001: MPNTNTPPTR KRNNLSRYNL KLCFSNPMQP FTPKSHPTNP TATSSPVHHN HNHPSPPATS STLIKDFNHD RSTVTPQNPF PSLGPEPKPA DLVTAFASQR
101: FFFTSPGRSN SIVESANTTD TDCTTSSSID ERQDQFKSFI HDSDEREAKA LLDSSIAVTK YSPDPYADFR QSMEEMVAAR PELMDVASKW RELHELLLCY
201: LALNPKSTHK FILRAFSDFL LSLISRSYFP PQDPGSDDDD VAGDGGGCSS

Best Arabidopsis Sequence Match ( AT1G05420.1 )
(BLAST)

001: MPRVMWKNFH LCFPSNLTKP SSSPSGATSD DPNRPSILLI NNFNLLYDDS SAAHRRLSKP LIHDVEPSST FTASTSTAAN SSSSSASYDD SDNYGFAPDD
101: DSPPPDLTAV LASRRFFFSS PGCSNSITDS PDLRCRDNYD TATRLLTGGT AVKHYVQSPD PYNDFRRSMQ EMIDAVTNAG DLRRYEFLHE LLLSYLSLNA
201: ADTHKFIIRA FADILVSLLS DGHRIS

Arabidopsis Description

ATOFP12ovate family protein 12 [Source:TAIR;Acc:AT1G05420]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.