CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32029	Soybean	cytosol	75.0	69.86
KRH35514	Soybean	plastid	33.33	37.78
KRG91320	Soybean	plastid	32.84	35.26
KRH67233	Soybean	nucleus, plastid	43.14	35.2
PGSC0003DMT400049756	Potato	mitochondrion	39.22	35.09
GSMUA_Achr4P07580_001	Banana	plastid	35.29	33.96
KRG95550	Soybean	mitochondrion, plastid	42.65	33.21
GSMUA_Achr3P30930_001	Banana	mitochondrion	33.82	32.86
Zm00001d027739_P001	Maize	nucleus, plastid	27.94	31.15
HORVU4Hr1G073070.1	Barley	mitochondrion	30.39	30.1
TraesCS4A01G030800.1	Wheat	mitochondrion	29.41	29.27
TraesCS4B01G275200.1	Wheat	mitochondrion	28.92	28.92
TraesCS4D01G273800.1	Wheat	mitochondrion	28.92	28.64
EER92828	Sorghum	mitochondrion	29.41	28.57
Os03t0159400-01	Rice	mitochondrion	28.92	27.57
KRH09849	Soybean	mitochondrion, nucleus	26.96	22.09
KRH44372	Soybean	nucleus	15.69	17.02
KRH47051	Soybean	nucleus	19.61	14.18

Protein Annotations

EntrezGene:102660213	MapMan:15.5.37	EMBL:ACUP02000898	EnsemblPlantsGene:GLYMA_02G146400	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	UniProt:I1JF95	InterPro:IPR006458
EnsemblPlants:KRH71408	ProteinID:KRH71408	ProteinID:KRH71408.1	InterPro:Ovate	InterPro:Ovate_C	PFAM:PF04844
PFscan:PS51754	PANTHER:PTHR33057	PANTHER:PTHR33057:SF65	TIGRFAMs:TIGR01568	UniParc:UPI00023BCBB7	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:15112886..15113500

Molecular Weight (calculated)

22941.2 Da

IEP (calculated)

6.236

GRAVY (calculated)

-0.339

Length

204 amino acids

Sequence
(BLAST)

001: MPSTRNLKHL NMCCSNSATP EYESPPLSPI TISSNHNITT PSSIMIKNFN SIYDHSFSST TTFFEPEPEP EPADFATAFA SQRFFFSSPG LSNSLVEYNN
101: TNKSTTQHLP PLLREDSGDV DEKKKKKVLF KGSVAVATYS PDPYVDFRRS MQEMVEARPE LMDVKSNWNV LHELLLCYLA LNPKSTHKFI LGAFADLLVS
201: LMSF

Best Arabidopsis Sequence Match ( AT1G05420.2 )
(BLAST)

001: MLNTYSLTLF LTKTKTMPRV MWKNFHLCFP SNLTKPSSSP SGATSDDPNR PSILLINNFN LLYDDSSAAH RRLSKPLIHD VEPSSTFTAS TSTAANSSSS
101: SASYDDSDNY GFAPDDDSPP PDLTAVLASR RFFFSSPGCS NSITDSPDLR CRDNYDTATR LLTGGTAVKH YVQSPDPYND FRRSMQEMID AVTNAGDLRR
201: YEFLHELLLS YLSLNAADTH KFIIRAFADI LVSLLSDGHR IS

Arabidopsis Description

ATOFP12ovate family protein 12 [Source:TAIR;Acc:AT1G05420]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.