Factsheet for PGSC0003DMT400082125

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082080.1.1	Tomato	cytosol, mitochondrion	80.91	84.36
VIT_05s0020g03520.t01	Wine grape	plastid	41.36	40.81
KRH35514	Soybean	plastid	32.27	39.44
PGSC0003DMT400049756	Potato	mitochondrion	37.73	36.4
KRG91320	Soybean	plastid	30.45	35.26
CDY10106	Canola	cytosol	34.09	34.72
CDY06168	Canola	cytosol, mitochondrion	35.45	33.77
GSMUA_Achr4P07580_001	Banana	plastid	32.27	33.49
Zm00001d027739_P001	Maize	nucleus, plastid	27.73	33.33
GSMUA_Achr3P30930_001	Banana	mitochondrion	31.36	32.86
Bra032464.1-P	Field mustard	nucleus, plastid	33.64	32.6
AT1G05420.2	Thale cress	mitochondrion, plastid	35.45	32.23
CDY10024	Canola	nucleus	33.18	32.16
CDY47289	Canola	cytosol	33.64	31.36
AT4G14860.1	Thale cress	plastid	25.91	31.32
CDY64911	Canola	cytosol	33.64	31.22
CDY12233	Canola	mitochondrion	33.18	30.93
Bra005611.1-P	Field mustard	cytosol	33.18	30.8
CDY42794	Canola	plastid	25.45	29.95
AT2G32100.1	Thale cress	nucleus	33.18	29.92
CDY29776	Canola	plastid	25.0	29.26
HORVU4Hr1G073070.1	Barley	mitochondrion	27.27	29.13
TraesCS4A01G030800.1	Wheat	mitochondrion	26.36	28.29
Os03t0159400-01	Rice	mitochondrion	27.27	28.04
EER92828	Sorghum	mitochondrion	26.36	27.62
TraesCS4B01G275200.1	Wheat	mitochondrion	25.45	27.45
TraesCS4D01G273800.1	Wheat	mitochondrion	25.45	27.18
Bra036908.1-P	Field mustard	plastid	25.0	25.7
PGSC0003DMT400014515	Potato	nucleus	27.73	21.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400082125	EnsemblPlantsGene:PGSC0003DMG400032276	EntrezGene:102605694	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045892	InterPro:IPR006458	InterPro:Ovate	InterPro:Ovate_C
PANTHER:PTHR33057	PANTHER:PTHR33057:SF21	PFAM:PF04844	PFscan:PS51754	PGSC:PGSC0003DMG400032276	RefSeq:XP_006360787.1
SEG:seg	TIGRFAMs:TIGR01568	UniParc:UPI000296A086	UniProt:M1D5P4	MapMan:15.5.37	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032276]

Coordinates

chr9:-:53737544..53738921

Molecular Weight (calculated)

24953.1 Da

IEP (calculated)

4.587

GRAVY (calculated)

-0.508

Length

220 amino acids

Sequence
(BLAST)

001: MPRILQKKFY HCLPSFKCLP TILSPPFEET EEEKTEKKKI KNFNSVFDIP SSDSATTSKS LTNSSIATTE EEDNSTNYIF TSFEDSDCTN TPDFSNIFAS
101: QRFFFSSPGN SNSIIDFPPE NPKEVVTGGV AVQTYSPDPY ADFRRSMQEM VEAHELTNVK ANWEFFHELL LCYLNLNPKH THKYIIGAYS DLVVSLMSID
201: DSEKKTEGTT KSCEQTTIVL

Best Arabidopsis Sequence Match ( AT1G05420.2 )
(BLAST)

001: MLNTYSLTLF LTKTKTMPRV MWKNFHLCFP SNLTKPSSSP SGATSDDPNR PSILLINNFN LLYDDSSAAH RRLSKPLIHD VEPSSTFTAS TSTAANSSSS
101: SASYDDSDNY GFAPDDDSPP PDLTAVLASR RFFFSSPGCS NSITDSPDLR CRDNYDTATR LLTGGTAVKH YVQSPDPYND FRRSMQEMID AVTNAGDLRR
201: YEFLHELLLS YLSLNAADTH KFIIRAFADI LVSLLSDGHR IS

Arabidopsis Description

ATOFP12ovate family protein 12 [Source:TAIR;Acc:AT1G05420]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.