Factsheet for Bra035748.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06378	Canola	mitochondrion	60.42	85.13
Bra035751.1-P	Field mustard	plastid	70.45	70.45
Bra023933.1-P	Field mustard	plastid	67.28	69.11
Bra035750.1-P	Field mustard	cytoskeleton, cytosol, nucleus	42.74	54.36
Bra041121.1-P	Field mustard	cytosol	8.71	46.48

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra035748	EnsemblPlants:Bra035748.1	EnsemblPlants:Bra035748.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016571	GO:GO:0019538	GO:GO:0035098	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4F3U8	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10253
PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002547A02	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

AT3G20740 (E=1e-150) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator

Coordinates

chrA05:+:16914610..16922790

Molecular Weight (calculated)

42699.3 Da

IEP (calculated)

4.920

GRAVY (calculated)

-0.297

Length

379 amino acids

Sequence
(BLAST)

001: MSKITLGNES LVGSLTPSNK KSYKLTNKIQ EGKTPLYSVA FNFIDARYFT CFVSAGGNGI NLYNCLEDGS ISLLYAFADE DKEEEFNTAS WACRVEGNPF
101: VVAGGEKGII RVIDVNNEKI HKSLVGHGDL VNEIRTQPLK PQLVLSASKD ESVRLWNVET GICILIFAGT GGHRNEVISV DFHPSDKHRF VSCGMDTTVK
201: IWSMKEFWTY VEKSFTWKDD PSKFPTKFVE LPVFTASVHT DFVDCNRWVG DFILSKSDEI LLWEPILKEN SPGEGTSDVL LRYPIPNCNL WFIKFSCDLS
301: LNYLSIGNNN NGLKYDSTHN NNNFEAAHNN SSSNRFQLVF DSPPFDMASF DYRDDMPMPG VVGTMDGMQQ KQQDVSIWF

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.