Factsheet for Solyc01g008850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058480	Potato	cytosol	98.17	98.17
VIT_06s0009g01840.t01	Wine grape	cytosol	89.04	88.84
Solyc11g062410.1.1	Tomato	plastid	88.36	88.56
GSMUA_Achr11P...	Banana	cytosol	83.56	83.37
Os12t0132200-01	Rice	cytosol	48.63	82.88
GSMUA_Achr7P21500_001	Banana	cytosol	83.11	81.8
OQU82814	Sorghum	cytosol	80.37	80.0
KRH14660	Soybean	cytosol	84.25	79.87
Bra034315.1-P	Field mustard	cytosol, mitochondrion	79.91	79.55
CDX77058	Canola	cytosol, mitochondrion	79.91	79.55
CDY48189	Canola	cytosol, mitochondrion	79.91	79.55
HORVU4Hr1G026300.12	Barley	cytosol	78.77	78.41
TraesCS4D01G126200.1	Wheat	cytosol	78.54	78.36
TraesCS4B01G131000.1	Wheat	cytosol	78.54	78.36
TraesCS4A01G187300.1	Wheat	cytosol	78.54	78.36
EES16537	Sorghum	cytosol	71.92	78.16
AT2G26980.4	Thale cress	cytosol	80.37	78.05
KRH73488	Soybean	cytosol	83.33	77.33
Zm00001d052416_P002	Maize	cytosol	79.91	76.92
Os11t0134300-01	Rice	cytosol	71.0	76.79
CDY16600	Canola	cytosol	76.94	76.59
CDX92400	Canola	cytosol	76.94	76.42
AT5G21326.1	Thale cress	cytosol	76.48	76.31
Bra002369.1-P	Field mustard	cytosol	76.71	76.19
GSMUA_Achr3P09340_001	Banana	cytosol, mitochondrion	77.17	75.62
Bra020156.1-P	Field mustard	cytosol	73.97	73.47
CDY09107	Canola	cytosol	73.97	73.47
Solyc02g021440.2.1	Tomato	cytosol	71.23	68.27
Solyc05g047600.2.1	Tomato	cytosol	68.49	66.52
Zm00001d044642_P001	Maize	nucleus	34.25	64.94
Zm00001d044644_P001	Maize	cytosol	41.32	61.56
Solyc12g009570.1.1	Tomato	cytosol	61.42	60.31
Solyc04g076810.2.1	Tomato	cytosol	57.53	56.38
Solyc05g053210.2.1	Tomato	cytosol	50.23	47.83
Solyc12g098910.1.1	Tomato	cytosol	50.23	47.11
Solyc03g115700.2.1	Tomato	cytosol, nucleus	34.7	30.16
Solyc02g067030.2.1	Tomato	cytosol, nucleus	34.93	29.77

Protein Annotations

KEGG:04150+2.7.11.1	KEGG:04151+2.7.11.1	KEGG:04714+2.7.11.1	KEGG:04926+2.7.11.1	KEGG:05165+2.7.11.1	Gene3D:1.10.510.10
MapMan:18.4.5.3	Gene3D:3.30.200.20	Gene3D:3.30.310.80	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	InterPro:IPR000719
InterPro:IPR018451	UniProt:K4AT81	InterPro:Kinase-like_dom_sf	InterPro:NAF/FISL_domain	InterPro:NAF_dom	PFAM:PF00069
PFAM:PF03822	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50816
PANTHER:PTHR24343	PANTHER:PTHR24343:SF189	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc01g008850.2	EnsemblPlants:Solyc01g008850.2.1	TMHMM:TMhelix	UniParc:UPI000276331F	:

Description

Non-specific serine/threonine protein kinase [Source:UniProtKB/TrEMBL;Acc:K4AT81]

Coordinates

chr1:+:2877780..2883889

Molecular Weight (calculated)

50144.2 Da

IEP (calculated)

7.357

GRAVY (calculated)

-0.459

Length

438 amino acids

Sequence
(BLAST)

001: MNRTKIKRRV GKYEVGRTIG EGTFAKVKFA KNSETGESVA IKILDKDKVL KHKMAEQIKR EIATMKLIRH PHVVQLYEVM GSKTKIFIVL EFVTGGELFD
101: KIVNHGRMRE EEARKYFQQL IHTVDYCHSR GVYHRDLKPE NLLLDSSGDL KVSDFGLSAL SQQVRADGLL HTTCGTPNYV APEVLNDRGY DGATADLWSC
201: GVILFVLLAG YLPFDDSNLM NLYNKISAAE FTCPPWISFG AIKLITRILD PNPTTRITVP EILEDEWFKK DYRPPVFDEI EDANLDDVEA VFRDSEEYHV
301: TERREEKPTS MNAFELISMS QGLNLGNLFD EQGFKRETRF TSKCPANEII SKIEEAAKPL GFDVHKKNYK MRLQNLKAGR KGNLNVSTEV FQVAPSLHMV
401: EVRKSKGDTL EFHKFYKNLS TCLDNVVWKT EQDMEEKK

Best Arabidopsis Sequence Match ( AT2G26980.4 )
(BLAST)

001: MLIPNKKLRE MNRRQQVKRR VGKYEVGRTI GEGTFAKVKF ARNSETGEPV ALKILDKEKV LKHKMAEQIR REIATMKLIK HPNVVQLYEV MASKTKIFII
101: LEYVTGGELF DKIVNDGRMK EDEARRYFQQ LIHAVDYCHS RGVYHRDLKP ENLLLDSYGN LKISDFGLSA LSQQVRDDGL LHTSCGTPNY VAPEVLNDRG
201: YDGATADMWS CGVVLYVLLA GYLPFDDSNL MNLYKKISSG EFNCPPWLSL GAMKLITRIL DPNPMTRVTP QEVFEDEWFK KDYKPPVFEE RDDSNMDDID
301: AVFKDSEEHL VTEKREEQPA AINAFEIISM SRGLNLENLF DPEQEFKRET RITLRGGANE IIEKIEEAAK PLGFDVQKKN YKMRLENVKA GRKGNLNVAT
401: EIFQVAPSLH MVQVSKSKGD TLEFHKFYKK LSNSLEQVVW TNNEVKKETA K

Arabidopsis Description

CIPK3Non-specific serine/threonine protein kinase [Source:UniProtKB/TrEMBL;Acc:F4IVM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.