Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G455100.1 | Wheat | nucleus | 78.32 | 86.15 |
| TraesCS2B01G476800.1 | Wheat | nucleus | 85.31 | 84.72 |
| Os04t0585900-01 | Rice | nucleus | 65.73 | 78.99 |
| EES12737 | Sorghum | cytosol, mitochondrion, nucleus | 69.93 | 78.74 |
| HORVU2Hr1G104980.1 | Barley | cytosol | 22.38 | 33.33 |
| GSMUA_Achr7P05660_001 | Banana | cytosol | 22.38 | 32.99 |
| HORVU2Hr1G105010.1 | Barley | cytosol | 21.68 | 32.29 |
| HORVU2Hr1G104960.1 | Barley | cytosol, nucleus, plastid | 26.57 | 30.89 |
| HORVU6Hr1G066670.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 22.38 | 29.91 |
| GSMUA_Achr4P19900_001 | Banana | cytosol | 20.28 | 29.59 |
| HORVU2Hr1G105060.1 | Barley | cytosol | 19.58 | 29.17 |
| HORVU6Hr1G066540.2 | Barley | nucleus | 30.77 | 28.95 |
| HORVU2Hr1G105050.1 | Barley | cytosol | 19.58 | 28.0 |
| HORVU6Hr1G066610.2 | Barley | cytosol, nucleus | 27.27 | 26.53 |
| HORVU2Hr1G105140.2 | Barley | mitochondrion, plastid | 22.38 | 19.63 |
| HORVU2Hr1G105100.2 | Barley | cytosol | 14.69 | 19.63 |
| HORVU0Hr1G021850.2 | Barley | plastid | 27.27 | 17.49 |
| GSMUA_Achr3P12600_001 | Banana | cytosol, mitochondrion, plasma membrane, plastid | 21.68 | 13.36 |
| HORVU2Hr1G105090.1 | Barley | cytosol, plastid | 18.88 | 11.54 |
Protein Annotations
| EMBL:AK374863 | EnsemblPlants:HORVU2Hr1G104950.3 | EnsemblPlantsGene:HORVU2Hr1G104950 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 |
| PANTHER:PTHR33059:SF66 | PFAM:PF04570 | PFscan:PS51795 | SEG:seg | UniParc:UPI0002008F20 | UniProt:F2EFD7 |
| MapMan:27.3.3 | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EFD7]
Coordinates
chrchr2H:+:705244229..705284732
Molecular Weight (calculated)
16261.2 Da
IEP (calculated)
9.994
GRAVY (calculated)
-0.978
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKGAAAMST MKPPSSPMFY VHEADAHGHY FLEECSLCGK SLSGDIFMYR GDTPFCSEEC RQQQIEVDRA RHRRKKHAAA HAVSAARKEH QHRHHHHHHH
101: HHHRQHQQPQ PQPQPQPRRA VVGAGATPWT DAGFAARSPA LRV
101: HHHRQHQQPQ PQPQPQPRRA VVGAGATPWT DAGFAARSPA LRV
1: MASYYSGFLG CEEPHFLESC SLCRKHLGLN SDIFMYRGDK AFCSNECREE QIESDEAKER KWKKSSRSLR KNSSETKESA AGNTVRTGTL VVA
Arabidopsis Description
At2g44670/F16B22.16 [Source:UniProtKB/TrEMBL;Acc:O80506]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.