CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43245	Soybean	mitochondrion	90.95	90.25
KRH33115	Soybean	nucleus	27.46	72.43
CDY42646	Canola	cytosol	11.23	64.29
CDY41998	Canola	extracellular	21.84	59.57
GSMUA_Achr5P16670_001	Banana	cytosol, mitochondrion	11.23	59.02
Bra011841.1-P	Field mustard	cytosol, nucleus, peroxisome	18.56	55.35
VIT_07s0031g01190.t01	Wine grape	mitochondrion	51.48	49.4
Solyc04g054470.2.1	Tomato	nucleus	47.43	47.57
AT4G39690.1	Thale cress	mitochondrion	48.21	47.54
CDY63447	Canola	plastid	46.18	45.68
Bra010667.1-P	Field mustard	plastid	45.4	44.29
CDX90351	Canola	plastid	45.55	44.04
TraesCS2A01G526700.1	Wheat	mitochondrion	39.0	41.32
TraesCS2D01G529400.1	Wheat	mitochondrion	38.85	41.16
TraesCS2B01G557000.2	Wheat	mitochondrion	38.38	40.66
Zm00001d026396_P004	Maize	mitochondrion	38.07	39.17
EES12936	Sorghum	mitochondrion	37.6	38.62
HORVU2Hr1G116190.1	Barley	plastid	38.69	36.96
GSMUA_Achr5P16660_001	Banana	cytosol, extracellular, plastid	31.98	34.22
Zm00001d002145_P001	Maize	mitochondrion	21.06	31.03
Os04t0636600-02	Rice	mitochondrion	13.73	23.85

Protein Annotations

EMBL:ACUP02003321	EnsemblPlants:KRH59405	EnsemblPlantsGene:GLYMA_05G181700	EntrezGene:100807909	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0016020	GO:GO:0016021
InterPro:Mt-IM_prot_Mitofilin	ncoils:Coil	PANTHER:PTHR15415	PANTHER:PTHR15415:SF7	PFAM:PF09731	ProteinID:KRH59405
ProteinID:KRH59405.1	SEG:seg	UniParc:UPI000295C756	UniProt:I1K4M7	MapMan:5.2.3.3.2.1.1	:

Description

hypothetical protein

Coordinates

chr5:-:36967811..36973815

Molecular Weight (calculated)

70853.2 Da

IEP (calculated)

4.873

GRAVY (calculated)

-0.556

Length

641 amino acids

Sequence
(BLAST)

001: MFRRYILQIS SRPTLRRNPR RFVYQQIPLH LSLQKNFSTA SKPGVSSASG SPGKPPESNG TLSKFFIGSV ALGAAFLAAY QTGYLDQYLK KEHYSVPQEP
101: HVNATIEDLK SVQHSTDQLI SPSEKFNHEN PTVEITEQKI DAHFSQPEIV VEDQVDKSDI AEEVTAAAKE NQLPEHPQSS LTSDDPSKES VAQSDGIIGI
201: QSTETDNAPR LEEGHHTSTS TQTSAVPDEN GMKNIQPEQL EIQETERRES ALGKDIEQLP TLLEEYQLRN KSEKSPATYI SSHGFTENSH FPEGKEALSG
301: AMEELKDGYI SENGKLVLDF LQAIHAAEKR QADLDARVFS EEKKVLKEKY EKKLKDAAAR ELMLAEEAAM LDRELKRERA KASLAINSLQ EKMEEKLKTE
401: LEQKEIEAEL KLKQAQELAK AELNAAIANE KAAQIEKMAE ANVNINALCM AFYARSEEAR QSHATQNFAL RALALEDALS KGLPIETEIA SLQSYLGGID
501: KDSILDLVLA SLPEETRSNG TDTQLQLKQK FDALKGSVRH FSFFPPGGGG MLAHSLAHLA SWLKVREDDQ SGDGIESVIN KVEVYLAEGK LAEAADCLEE
601: SVRGTQAAEI VAGWVRQARN RAISEQAVLL LQSYANSLSL T

Best Arabidopsis Sequence Match ( AT4G39690.1 )
(BLAST)

001: MLRKSVLELS SRLSIKRFPR NLGAQRFHLS SSRNASTSGK NGLPGAKPVG KPDASKVDPP KVTPPPPTKG NSSKVVIGGV AIAGAFLVAY QTGYLDQYLG
101: KEQQKLSERI HSDALTEKLE EAHHLNVPSG VEDSTEKDGK VETQPQVTHS EASEGVQSDI ELQPESDLSS DRFTYISSNQ EETPQETVID RAEINLPISA
201: SEDSGAKPDM PSEIISEAES VKLEAVPKPG DSPIIVNAQS SSVHRESETE SASPKDPAAL KTPEDGIERE VQLPGSLLKE YNLEGSDTES TGSSSIGEQI
301: TKETEAFPNS TEGLKDSYMT EDGKLVLDFL AAIHAAEKQQ AHLDAQVFAE ELRALKEKYE NELRDLRARE LMRIEEAAIL DKELKRERTK AAAAIKAIQE
401: RMEDKLKAEL EQKETEAQLA LSKAEELAKA EMISTIAKEK AAQIEKMAEA DLNIKALSMA FYARSEEARQ SHSVHKLALG ALALDDTLSK GLPVQKEIDT
501: LQTYLEGTHK DSILGLVLSS LPEEARSNGT DTVLQLNQKF DTLKGTLRHF SLIPPGGGGI LAHSLAHVAS SLKFKEVDQA NGGIESVIKK VDNYLAEGKL
601: AEAAATLEEG VKGSKAEEIV SDWVRRARNR AITEQALTLL QSYATCVSLT

Arabidopsis Description

AT4g39690/T19P19_80 [Source:UniProtKB/TrEMBL;Acc:Q9ASV5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.