Factsheet for Solyc04g054470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42646	Canola	cytosol	11.89	67.86
GSMUA_Achr5P16670_001	Banana	cytosol, mitochondrion	11.11	58.2
CDY41998	Canola	extracellular	21.13	57.45
Bra011841.1-P	Field mustard	cytosol, nucleus, peroxisome	16.74	49.77
VIT_07s0031g01190.t01	Wine grape	mitochondrion	50.08	47.9
KRH59405	Soybean	mitochondrion	47.57	47.43
KRH43245	Soybean	mitochondrion	47.26	46.75
AT4G39690.1	Thale cress	mitochondrion	46.17	45.38
CDY63447	Canola	plastid	42.25	41.67
Bra010667.1-P	Field mustard	plastid	42.41	41.25
CDX90351	Canola	plastid	42.57	41.03
TraesCS2A01G526700.1	Wheat	mitochondrion	38.81	40.99
TraesCS2D01G529400.1	Wheat	mitochondrion	38.65	40.83
TraesCS2B01G557000.2	Wheat	mitochondrion	38.5	40.66
KRH33115	Soybean	nucleus	15.34	40.33
Zm00001d026396_P004	Maize	mitochondrion	38.81	39.81
EES12936	Sorghum	mitochondrion	38.34	39.26
HORVU2Hr1G116190.1	Barley	plastid	39.44	37.56
GSMUA_Achr5P16660_001	Banana	cytosol, extracellular, plastid	32.39	34.56
Zm00001d002145_P001	Maize	mitochondrion	20.19	29.66
Os04t0636600-02	Rice	mitochondrion	13.46	23.31

Protein Annotations

MapMan:5.2.3.3.2.1.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0097035	GO:GO:0098800
GO:GO:1901612	UniProt:K4BSK2	InterPro:Mt-IM_prot_Mitofilin	PFAM:PF09731	PANTHER:PTHR15415	PANTHER:PTHR15415:SF7
EnsemblPlantsGene:Solyc04g054470.2	EnsemblPlants:Solyc04g054470.2.1	UniParc:UPI0002765832	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:52560248..52571674

Molecular Weight (calculated)

70324.5 Da

IEP (calculated)

4.767

GRAVY (calculated)

-0.589

Length

639 amino acids

Sequence
(BLAST)

001: MLRRSILRLS AGQSVKRIPA EVITQVPSYL FSRREFSVSP KQNGPPRGPG STGKPKETVS LLPRFIIGSV ALSAGFFAAY QTGYLDKYLI KEPHSSPELA
101: RDETGLQGVK ELKESSEVSQ DSETLGRPDA GSKFVESDSP EQTYQSIGIQ QDLSGSEEPT ATGSESQFQV NDSSEITGGE ANYTEVKELS PSSHQENVSP
201: DETRLTSTQS PEDTLDMKSP EVSTDAVQSK AIEITPTPTQ ADTLQKENEA SVMSPEHVIS QAKMEDAPQH EEKPSSLLDE YYLRNGVGAT PTTSSDKKMV
301: VEDLGDSYIS KDGKLVLDVL QVIHETESRQ AELDARLFAE EKKYMKERYE KELKDARARE LMYAEREALL DKELKKERAK AIAALKSLKE KLEEEHKTEL
401: EEKEDEAELK LKKAQELGKA QLDAAIASEK ASQIEKMAEA NLHINALCMA FYARSEEVRQ THSVHKLALG VLALEDALSR GLPIQKELEN LHTSLEGIDN
501: NSLLDVVLSS LPEETQRYGS DTVLQLNHKF DTLKGTLRHF SLIPPGGGGI LTHSLASVAS WLKVREAGQS GDGIESLINK VESFLAQGKL SEAADALEKG
601: LKDTHAAEIV DDWVKRARNR AITEQALTLL QSYATTIST

Best Arabidopsis Sequence Match ( AT4G39690.1 )
(BLAST)

001: MLRKSVLELS SRLSIKRFPR NLGAQRFHLS SSRNASTSGK NGLPGAKPVG KPDASKVDPP KVTPPPPTKG NSSKVVIGGV AIAGAFLVAY QTGYLDQYLG
101: KEQQKLSERI HSDALTEKLE EAHHLNVPSG VEDSTEKDGK VETQPQVTHS EASEGVQSDI ELQPESDLSS DRFTYISSNQ EETPQETVID RAEINLPISA
201: SEDSGAKPDM PSEIISEAES VKLEAVPKPG DSPIIVNAQS SSVHRESETE SASPKDPAAL KTPEDGIERE VQLPGSLLKE YNLEGSDTES TGSSSIGEQI
301: TKETEAFPNS TEGLKDSYMT EDGKLVLDFL AAIHAAEKQQ AHLDAQVFAE ELRALKEKYE NELRDLRARE LMRIEEAAIL DKELKRERTK AAAAIKAIQE
401: RMEDKLKAEL EQKETEAQLA LSKAEELAKA EMISTIAKEK AAQIEKMAEA DLNIKALSMA FYARSEEARQ SHSVHKLALG ALALDDTLSK GLPVQKEIDT
501: LQTYLEGTHK DSILGLVLSS LPEEARSNGT DTVLQLNQKF DTLKGTLRHF SLIPPGGGGI LAHSLAHVAS SLKFKEVDQA NGGIESVIKK VDNYLAEGKL
601: AEAAATLEEG VKGSKAEEIV SDWVRRARNR AITEQALTLL QSYATCVSLT

Arabidopsis Description

AT4g39690/T19P19_80 [Source:UniProtKB/TrEMBL;Acc:Q9ASV5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.