Factsheet for HORVU3Hr1G109340.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060490.5
HORVU6Hr1G050500.2
HORVU6Hr1G050520.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31817.1	HORVU1Hr1G060490.5	AT5G05410.1	18552202
AT1G31817.1	HORVU6Hr1G050500.2	AT5G05410.1	18552202
AT1G31817.1	HORVU6Hr1G050520.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G575400.1	Wheat	mitochondrion, plastid	93.04	93.04
HORVU2Hr1G124790.2	Barley	mitochondrion	81.32	89.16
GSMUA_AchrUn_...	Banana	cytosol	34.07	54.39
KXG22494	Sorghum	mitochondrion	41.03	43.92
Zm00001d009476_P001	Maize	mitochondrion	39.93	43.25
Solyc08g075720.1.1	Tomato	cytosol	21.98	38.46
VIT_05s0062g00880.t01	Wine grape	mitochondrion	26.01	35.86
Os03t0385900-01	Rice	plastid	40.66	33.43
HORVU0Hr1G005500.4	Barley	nucleus, plastid	36.26	32.46
PGSC0003DMT400079312	Potato	mitochondrion	22.71	26.61
CDY63075	Canola	mitochondrion	26.37	24.66
CDY12287	Canola	mitochondrion	25.64	23.65
AT1G31817.1	Thale cress	mitochondrion	27.11	23.57
KRH38700	Soybean	mitochondrion	28.21	23.4
Bra023208.1-P	Field mustard	mitochondrion	25.64	22.65
KRH09204	Soybean	cytosol	26.37	21.18
CDY47693	Canola	plastid	22.34	17.23

Protein Annotations

MapMan:17.7.1.2.9	Gene3D:3.30.420.80	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU3Hr1G109340	EnsemblPlants:HORVU3Hr1G109340.1
InterPro:IPR036967	UniProt:M0Y3B9	HAMAP:MF_01310	PFAM:PF00411	PANTHER:PTHR11759	PANTHER:PTHR11759:SF8
InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0002954335	SEG:seg	:

Description

No Description!

Coordinates

chrchr3H:-:677561347..677563149

Molecular Weight (calculated)

28654.9 Da

IEP (calculated)

11.945

GRAVY (calculated)

-0.461

Length

273 amino acids

Sequence
(BLAST)

001: MAARALGLAG RALLRPLASP GAQRLLSTDK GPLQGLTDAG DPMSRLVMQA RNQTGGGFSR QFAENGFTAG GGRMGENGFT AGDARMGGNG FTAGDGRMGG
101: NGFTAGGGRM GGNGFTAGGG RMGGNGFTAG GRSGRFNMEM LRPEGVPRVK RDVLHVTLKG KKTFVTVTDV KGNRKAGASA GCLEDRKGRS RLARYAGEAT
201: GEHMGRVANK IGLKSVVVKV KGYSFFRKKK KVIMGFADGF RGERVRTPSP IMYVHDVTQL AHNGCRLPKK VRK

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.