CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31817.1	CDX70151	AT5G05410.1	18552202
AT1G31817.1	CDX98843	AT5G05410.1	18552202
AT1G31817.1	CDY04950	AT5G05410.1	18552202
AT1G31817.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075720.1.1	Tomato	cytosol	18.08	41.03
CDY63075	Canola	mitochondrion	32.77	39.73
CDY12287	Canola	mitochondrion	32.49	38.85
VIT_05s0062g00880.t01	Wine grape	mitochondrion	19.77	35.35
AT1G31817.1	Thale cress	mitochondrion	30.79	34.71
GSMUA_AchrUn_...	Banana	cytosol	15.82	32.75
PGSC0003DMT400079312	Potato	mitochondrion	19.21	29.18
HORVU2Hr1G124790.2	Barley	mitochondrion	17.51	24.9
Zm00001d009476_P001	Maize	mitochondrion	17.51	24.6
KRH38700	Soybean	mitochondrion	21.19	22.8
TraesCS2A01G575400.1	Wheat	mitochondrion, plastid	17.51	22.71
TraesCS3B01G552000.1	Wheat	mitochondrion	16.67	22.52
HORVU3Hr1G109340.1	Barley	mitochondrion	17.23	22.34
TraesCS3A01G490900.1	Wheat	mitochondrion	16.95	21.9
TraesCS2A01G459000.1	Wheat	mitochondrion	11.58	21.81
KRH09204	Soybean	cytosol	20.9	21.76
TraesCS3D01G496900.1	Wheat	mitochondrion	16.1	21.76
KXG22494	Sorghum	mitochondrion	15.25	21.18
TraesCS2D01G586100.1	Wheat	mitochondrion	16.1	19.93
TraesCS2B01G611800.2	Wheat	mitochondrion, plastid	16.95	19.54
Os03t0385900-01	Rice	plastid	17.23	18.37
HORVU0Hr1G005500.4	Barley	nucleus, plastid	10.73	12.46

Protein Annotations

MapMan:17.7.1.2.9	Gene3D:3.30.420.80	GO:A0A078IEU4	UniProt:A0A078IEU4	EnsemblPlants:CDY47693	ProteinID:CDY47693
ProteinID:CDY47693.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00087954001	InterPro:IPR036967	PFAM:PF00411
PANTHER:PTHR11759	PANTHER:PTHR11759:SF8	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0004EC9887
SEG:seg	:	:	:	:	:

Description

BnaCnng15350DBnaCnng15350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEU4]

Coordinates

chrLK032730:-:126914..129380

Molecular Weight (calculated)

38949.7 Da

IEP (calculated)

10.659

GRAVY (calculated)

-0.481

Length

354 amino acids

Sequence
(BLAST)

001: MELYVLHLVS KGHASFWWHG HFSRMRRGIA VKSVSGQTTV GIDPQRGSMR TCWMLNKRDF SVKQGPVPGD SESKSGLPNP NASPFKSFSE IKAGLSNTGG
101: KSFNTFSEDM RSGLTPNAPP TVKNPMRSRF PNTNLPDQLN LPSTAGSGSS APSYQSFTQS IERPGLYSKG NVKCKATSGS LPDLKGGRKM TSYTADATAE
201: NIGRRVKAMG LKSVVVKANG FTHFKKKRNA IVAFRSGYSS SRNDQNPIVY IEDTTRKAHN GCRLPRKRRS QQQPLLPDPS HNLKVNPFGL LSSSIHGNPL
301: ALYGLESDPP LLLKLSTISR RLVMVDMDYD LPTLLSSLVL YLVYDYLGRE AMCF

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.