Factsheet for Zm00001d009476_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010048_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31817.1	Zm00001d010048_P004	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22494	Sorghum	mitochondrion	82.54	81.57
GSMUA_AchrUn_...	Banana	cytosol	39.68	58.48
Solyc08g075720.1.1	Tomato	cytosol	28.57	46.15
TraesCS2A01G459000.1	Wheat	mitochondrion	30.95	41.49
TraesCS3B01G552000.1	Wheat	mitochondrion	42.46	40.84
Os03t0385900-01	Rice	plastid	53.57	40.66
HORVU2Hr1G124790.2	Barley	mitochondrion	40.08	40.56
TraesCS3D01G496900.1	Wheat	mitochondrion	42.06	40.46
HORVU3Hr1G109340.1	Barley	mitochondrion	43.25	39.93
VIT_05s0062g00880.t01	Wine grape	mitochondrion	31.35	39.9
TraesCS3A01G490900.1	Wheat	mitochondrion	42.86	39.42
TraesCS2A01G575400.1	Wheat	mitochondrion, plastid	41.67	38.46
TraesCS2D01G586100.1	Wheat	mitochondrion	40.87	36.01
TraesCS2B01G611800.2	Wheat	mitochondrion, plastid	41.67	34.2
PGSC0003DMT400079312	Potato	mitochondrion	30.16	32.62
KRH38700	Soybean	mitochondrion	32.94	25.23
HORVU0Hr1G005500.4	Barley	nucleus, plastid	29.76	24.59
CDY12287	Canola	mitochondrion	27.78	23.65
CDY63075	Canola	mitochondrion	26.98	23.29
KRH09204	Soybean	cytosol	31.35	23.24
Bra023208.1-P	Field mustard	mitochondrion	27.38	22.33
AT1G31817.1	Thale cress	mitochondrion	26.98	21.66
CDY47693	Canola	plastid	24.6	17.51

Protein Annotations

EntrezGene:100282151	MapMan:17.7.1.2.9	Gene3D:3.30.420.80	ProteinID:AQK91967.1	ProteinID:AQK91968.1	UniProt:B6T442
EMBL:BT065234	EMBL:EU959757	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036967	HAMAP:MF_01310
PFAM:PF00411	PANTHER:PTHR11759	PANTHER:PTHR11759:SF8	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137
UniParc:UPI000182CBD9	EnsemblPlantsGene:Zm00001d009476	EnsemblPlants:Zm00001d009476_P001	EnsemblPlants:Zm00001d009476_T001	SEG:seg	:

Description

Probable ribosomal protein S11 mitochondrial

Coordinates

chr8:-:66327073..66329694

Molecular Weight (calculated)

27917.4 Da

IEP (calculated)

11.790

GRAVY (calculated)

-0.623

Length

252 amino acids

Sequence
(BLAST)

001: MFSSARLALR RAASLGAGLC RAAEDPFSRR FLHGQLLPRS FASDASGHNR GFPPSGSGVV ADTDPRQNFN RSGFVSQDIR AKTQVNFNNT DNGAAMSGTP
101: RGQNPFSSRE GFTVNLRTFA MDHEQYSKKR AFVHVLLKRK KTFVTVTDSS GNKKTGASAG CLEDRKGRSR LSRYASEAVA EQVGRSARKM GLSSIVMKVK
201: GASFFKKKKK VILSFREGFR GERVRDQSPI MYIHDVTQLP HNGCRLPKQR RV

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.