Factsheet for HORVU0Hr1G005500.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060490.5
HORVU6Hr1G050500.2
HORVU6Hr1G050520.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31817.1	HORVU1Hr1G060490.5	AT5G05410.1	18552202
AT1G31817.1	HORVU6Hr1G050500.2	AT5G05410.1	18552202
AT1G31817.1	HORVU6Hr1G050520.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G459000.1	Wheat	mitochondrion	31.48	51.06
HORVU2Hr1G124790.2	Barley	mitochondrion	31.8	38.96
HORVU3Hr1G109340.1	Barley	mitochondrion	32.46	36.26
GSMUA_AchrUn_...	Banana	cytosol	20.0	35.67
KXG22494	Sorghum	mitochondrion	26.56	31.76
Zm00001d009476_P001	Maize	mitochondrion	24.59	29.76
Solyc08g075720.1.1	Tomato	cytosol	13.44	26.28
Os03t0385900-01	Rice	plastid	26.89	24.7
VIT_05s0062g00880.t01	Wine grape	mitochondrion	15.41	23.74
PGSC0003DMT400079312	Potato	mitochondrion	14.75	19.31
AT1G31817.1	Thale cress	mitochondrion	18.69	18.15
CDY63075	Canola	mitochondrion	17.05	17.81
CDY12287	Canola	mitochondrion	15.74	16.22
KRH38700	Soybean	mitochondrion	17.05	15.81
Bra023208.1-P	Field mustard	mitochondrion	15.74	15.53
KRH09204	Soybean	cytosol	17.05	15.29
CDY47693	Canola	plastid	12.46	10.73

Protein Annotations

MapMan:17.7.1.2.9	Gene3D:3.30.420.80	UniProt:A0A287DWE5	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU0Hr1G005500
EnsemblPlants:HORVU0Hr1G005500.4	InterPro:IPR036967	PANTHER:PTHR11759	PANTHER:PTHR11759:SF8	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf
SUPFAM:SSF53137	UniParc:UPI000B4696E9	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchrUn:+:30477130..30479413

Molecular Weight (calculated)

33514.2 Da

IEP (calculated)

11.929

GRAVY (calculated)

-0.740

Length

305 amino acids

Sequence
(BLAST)

001: PPPPRSLAAA SSGDWIRIPR PQNFLRPPSG PRPTIPRLPP PSSDRRDAYA PSRQPRPDPS SHRSRRRCLP LPNSAPSPTP PALRRRRHLC PLSVKDFVPA
101: IASSIYRTSS SSVQQTAMAV RALGLAGRAL LRPVASPGTQ RLLSTDKNSL QGLTNGDPMS RLMQTQKQND CIYRRFAEND FTGGGSRSGR LNMEITWTAA
201: PRVKIDVLHT TPKEKETFVT VTGVKENRKS GPSAGCLEDR KGRSRLAQYA GEATGEHMGQ SASTIGLKSV AVKVKGCSFY RKKKKVLFSF ADRSRRERVR
301: SSSPK

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.