CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09204	Soybean	cytosol	76.6	74.12
Solyc08g075720.1.1	Tomato	cytosol	30.4	64.1
VIT_05s0062g00880.t01	Wine grape	mitochondrion	33.74	56.06
GSMUA_AchrUn_...	Banana	cytosol	25.23	48.54
PGSC0003DMT400079312	Potato	mitochondrion	34.35	48.5
CDY63075	Canola	mitochondrion	34.04	38.36
CDY12287	Canola	mitochondrion	34.35	38.18
AT1G31817.1	Thale cress	mitochondrion	34.95	36.62
Bra023208.1-P	Field mustard	mitochondrion	33.43	35.6
Zm00001d009476_P001	Maize	mitochondrion	25.23	32.94
KXG22494	Sorghum	mitochondrion	24.62	31.76
HORVU2Hr1G124790.2	Barley	mitochondrion	23.1	30.52
TraesCS3D01G496900.1	Wheat	mitochondrion	23.4	29.39
TraesCS3B01G552000.1	Wheat	mitochondrion	23.1	29.01
HORVU3Hr1G109340.1	Barley	mitochondrion	23.4	28.21
TraesCS3A01G490900.1	Wheat	mitochondrion	23.4	28.1
TraesCS2A01G459000.1	Wheat	mitochondrion	15.81	27.66
TraesCS2A01G575400.1	Wheat	mitochondrion, plastid	22.8	27.47
Os03t0385900-01	Rice	plastid	26.14	25.9
TraesCS2D01G586100.1	Wheat	mitochondrion	21.88	25.17
TraesCS2B01G611800.2	Wheat	mitochondrion, plastid	23.1	24.76
CDY47693	Canola	plastid	22.8	21.19
HORVU0Hr1G005500.4	Barley	nucleus, plastid	15.81	17.05

Protein Annotations

EntrezGene:100799648	MapMan:17.7.1.2.9	Gene3D:3.30.420.80	EMBL:ACUP02005865	EnsemblPlantsGene:GLYMA_09G152000	GO:GO:0000028
GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005763	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0048027	GO:GO:0070181
UniProt:I1L3J2	InterPro:IPR036967	EnsemblPlants:KRH38700	ProteinID:KRH38700	ProteinID:KRH38700.1	HAMAP:MF_01310
PFAM:PF00411	PANTHER:PTHR11759	PANTHER:PTHR11759:SF8	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137
UniParc:UPI00023388D6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:37446854..37449260

Molecular Weight (calculated)

37364.0 Da

IEP (calculated)

10.941

GRAVY (calculated)

-0.947

Length

329 amino acids

Sequence
(BLAST)

001: MYRFFSSIRH GRGSSLASLL APKPALPFNA ALRPRRLPQN DGHVRGFSSS NLDWRRLIVN QNVNADANAH PDSMQDIEKR NSEKWNNMRQ NMNPDANAPP
101: NFVQNRGNIN SRSWNNMRQN VNAPPNFMGN RDNINSRSQN NMDQNVDANA DALPDFMQDK ENINIGNKNY AETGWNSRPM DFVRGIIDED NFGRGSPYHQ
201: YQYEQDADFV HIKMLRNNTF VTVTDSKGNI KLSGSAGPLK DLKSGQKLSR YAAEATAEVV GRKARGLGLK SVVMKVNGFT HFRRKRNAIM SWKEGFTAGS
301: RGDRNPIVYI EDTTRKPHNG CRLPKKRRI

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.