Factsheet for VIT_05s0062g00880.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g075720.1.1	Tomato	cytosol	51.52	65.38
GSMUA_AchrUn_...	Banana	cytosol	46.46	53.8
PGSC0003DMT400079312	Potato	mitochondrion	54.04	45.92
CDY12287	Canola	mitochondrion	51.01	34.12
CDY63075	Canola	mitochondrion	50.0	33.9
KRH38700	Soybean	mitochondrion	56.06	33.74
Bra023208.1-P	Field mustard	mitochondrion	51.01	32.69
KRH09204	Soybean	cytosol	56.06	32.65
AT1G31817.1	Thale cress	mitochondrion	51.52	32.48
KXG22494	Sorghum	mitochondrion	40.4	31.37
Zm00001d009476_P001	Maize	mitochondrion	39.9	31.35
HORVU2Hr1G124790.2	Barley	mitochondrion	35.35	28.11
TraesCS2A01G459000.1	Wheat	mitochondrion	25.76	27.13
TraesCS3B01G552000.1	Wheat	mitochondrion	35.86	27.1
TraesCS3D01G496900.1	Wheat	mitochondrion	35.35	26.72
HORVU3Hr1G109340.1	Barley	mitochondrion	35.86	26.01
TraesCS2A01G575400.1	Wheat	mitochondrion, plastid	35.86	26.01
Os03t0385900-01	Rice	plastid	42.93	25.6
TraesCS3A01G490900.1	Wheat	mitochondrion	35.35	25.55
TraesCS2D01G586100.1	Wheat	mitochondrion	34.85	24.13
TraesCS2B01G611800.2	Wheat	mitochondrion, plastid	35.86	23.13
CDY47693	Canola	plastid	35.35	19.77
HORVU0Hr1G005500.4	Barley	nucleus, plastid	23.74	15.41

Protein Annotations

EntrezGene:100256569	MapMan:17.7.1.2.9	Gene3D:3.30.420.80	ProteinID:CCB61804	ProteinID:CCB61804.1	UniProt:F6I489
EMBL:FN596745	GO:GO:0000028	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005763	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0048027	GO:GO:0070181	InterPro:IPR036967	HAMAP:MF_01310	PFAM:PF00411	PANTHER:PTHR11759
PANTHER:PTHR11759:SF8	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	TIGR:TC67372	UniParc:UPI0001983586
ArrayExpress:VIT_05s0062g00880	EnsemblPlantsGene:VIT_05s0062g00880	EnsemblPlants:VIT_05s0062g00880.t01	unigene:Vvi.8575	RefSeq:XP_010650403.1	SEG:seg

Description

No Description!

Coordinates

chr5:+:19399787..19401529

Molecular Weight (calculated)

22279.0 Da

IEP (calculated)

11.490

GRAVY (calculated)

-0.587

Length

198 amino acids

Sequence
(BLAST)

001: MQALIRNTSK LRALITNQAL VLRSNALFSS SAFPGSRDFE MGRNSRSMNF VRGIIEQDRR NIPGSAQFPR YTVEQNPDIV HIKLIRNNAF VTVTDSKGNK
101: KIGASSGCLS EMKGGPKLSR YAADATAEHV GRLARNLGLK SVVMKVKGFT YFKKKKQAIM SWKEGFNSSR GDENPIMYIE DTTRRPHNGC RLPRKRRV

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.