CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG21735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31817.1	KXG21735	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009476_P001	Maize	mitochondrion	81.57	82.54
GSMUA_AchrUn_...	Banana	cytosol	40.78	60.82
Solyc08g075720.1.1	Tomato	cytosol	27.06	44.23
TraesCS2A01G459000.1	Wheat	mitochondrion	32.16	43.62
TraesCS3B01G552000.1	Wheat	mitochondrion	42.75	41.6
HORVU2Hr1G124790.2	Barley	mitochondrion	40.39	41.37
TraesCS3D01G496900.1	Wheat	mitochondrion	42.35	41.22
HORVU3Hr1G109340.1	Barley	mitochondrion	43.92	41.03
VIT_05s0062g00880.t01	Wine grape	mitochondrion	31.37	40.4
TraesCS3A01G490900.1	Wheat	mitochondrion	43.14	40.15
TraesCS2A01G575400.1	Wheat	mitochondrion, plastid	42.75	39.93
Os03t0385900-01	Rice	plastid	51.76	39.76
TraesCS2D01G586100.1	Wheat	mitochondrion	41.18	36.71
TraesCS2B01G611800.2	Wheat	mitochondrion, plastid	42.35	35.18
PGSC0003DMT400079312	Potato	mitochondrion	29.41	32.19
HORVU0Hr1G005500.4	Barley	nucleus, plastid	31.76	26.56
KRH38700	Soybean	mitochondrion	31.76	24.62
CDY63075	Canola	mitochondrion	27.45	23.97
CDY12287	Canola	mitochondrion	27.06	23.31
KRH09204	Soybean	cytosol	30.59	22.94
Bra023208.1-P	Field mustard	mitochondrion	26.67	22.01
AT1G31817.1	Thale cress	mitochondrion	26.27	21.34
CDY47693	Canola	plastid	21.18	15.25

Protein Annotations

MapMan:17.7.1.2.9	Gene3D:3.30.420.80	UniProt:A0A1B6P9V1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036967
EnsemblPlants:KXG22494	ProteinID:KXG22494	ProteinID:KXG22494.1	HAMAP:MF_01310	PFAM:PF00411	PANTHER:PTHR11759
PANTHER:PTHR11759:SF8	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	EnsemblPlantsGene:SORBI_3009G222900	SUPFAM:SSF53137	UniParc:UPI00081AD23B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:56546253..56549969

Molecular Weight (calculated)

28612.3 Da

IEP (calculated)

11.695

GRAVY (calculated)

-0.666

Length

255 amino acids

Sequence
(BLAST)

001: MAMFSSARLA VRRAASLGAG LCRAAEDPFS RRLLHGQLLP RSFASDAFGH SRPFPPVGSG IADLDPRQNF NRFNFVRQDT RSNAQVNFNN TDNGAAMSRT
101: ATGEKLSSSR EGFPFSSLRD FTKDHEQYSK KKRDFVHVLL KKKKTFVTVT DSDGNKKTGA SAGCLEDRKG RSRLSRYASE AVGEHVGRSA RKMGLTSVVL
201: KVKGAAFFRK KKKVILSFRE GFRGERVRDR SPIMYIHDVT QLPHNGCRLR KQRRV

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.