Factsheet for TraesCS2A01G459000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31817.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT1G31817.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT1G31817.1	TraesCS1D01G223600.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G575400.1	Wheat	mitochondrion, plastid	56.91	39.19
TraesCS3A01G490900.1	Wheat	mitochondrion	56.38	38.69
GSMUA_AchrUn_...	Banana	cytosol	32.98	36.26
KXG22494	Sorghum	mitochondrion	43.62	32.16
HORVU0Hr1G005500.4	Barley	nucleus, plastid	51.06	31.48
Zm00001d009476_P001	Maize	mitochondrion	41.49	30.95
Solyc08g075720.1.1	Tomato	cytosol	23.4	28.21
VIT_05s0062g00880.t01	Wine grape	mitochondrion	27.13	25.76
Os03t0385900-01	Rice	plastid	39.36	22.29
PGSC0003DMT400079312	Potato	mitochondrion	26.6	21.46
KRH38700	Soybean	mitochondrion	27.66	15.81
CDY63075	Canola	mitochondrion	24.47	15.75
CDY12287	Canola	mitochondrion	24.47	15.54
AT1G31817.1	Thale cress	mitochondrion	25.53	15.29
Bra023208.1-P	Field mustard	mitochondrion	24.47	14.89
KRH09204	Soybean	cytosol	25.0	13.82
CDY47693	Canola	plastid	21.81	11.58

Protein Annotations

MapMan:17.7.1.2.9	Gene3D:3.30.420.80	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036967	PFAM:PF00411
PANTHER:PTHR11759	PANTHER:PTHR11759:SF8	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	EnsemblPlantsGene:TraesCS2A01G459000
EnsemblPlants:TraesCS2A01G459000.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:706217594..706218975

Molecular Weight (calculated)

20395.9 Da

IEP (calculated)

11.732

GRAVY (calculated)

-0.459

Length

188 amino acids

Sequence
(BLAST)

001: MAARALGLAG RALLRPVASP GTQRLLSTDK NSLQGLTNGD PVSRLMQTRK QNDSIYSRFA ENDFTGGGSR SGRLNMEITW TAAPRVKMDV LHITPKEKKT
101: FVTVTDVKEN RKAGASAGCL EDRKGRFRLA RCAGEATGKH MGRSASTIGL KSIVVKVKGC SFFRKKKKVL LSFAAGSRGE RVRSLSPK

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.