CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31817.1	CDX70151	AT5G05410.1	18552202
AT1G31817.1	CDX98843	AT5G05410.1	18552202
AT1G31817.1	CDY04950	AT5G05410.1	18552202
AT1G31817.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023208.1-P	Field mustard	mitochondrion	91.22	87.38
CDY63075	Canola	mitochondrion	73.99	75.0
AT1G31817.1	Thale cress	mitochondrion	70.61	66.56
Solyc08g075720.1.1	Tomato	cytosol	29.73	56.41
VIT_05s0062g00880.t01	Wine grape	mitochondrion	34.12	51.01
PGSC0003DMT400079312	Potato	mitochondrion	33.11	42.06
GSMUA_AchrUn_...	Banana	cytosol	23.65	40.94
KRH38700	Soybean	mitochondrion	38.18	34.35
CDY47693	Canola	plastid	38.85	32.49
KRH09204	Soybean	cytosol	36.49	31.76
Zm00001d009476_P001	Maize	mitochondrion	23.65	27.78
HORVU2Hr1G124790.2	Barley	mitochondrion	22.97	27.31
KXG22494	Sorghum	mitochondrion	23.31	27.06
TraesCS3B01G552000.1	Wheat	mitochondrion	23.31	26.34
HORVU3Hr1G109340.1	Barley	mitochondrion	23.65	25.64
TraesCS2A01G575400.1	Wheat	mitochondrion, plastid	23.65	25.64
TraesCS3D01G496900.1	Wheat	mitochondrion	22.3	25.19
TraesCS2A01G459000.1	Wheat	mitochondrion	15.54	24.47
TraesCS3A01G490900.1	Wheat	mitochondrion	22.64	24.45
Os03t0385900-01	Rice	plastid	27.03	24.1
TraesCS2B01G611800.2	Wheat	mitochondrion, plastid	23.99	23.13
TraesCS2D01G586100.1	Wheat	mitochondrion	21.96	22.73
HORVU0Hr1G005500.4	Barley	nucleus, plastid	16.22	15.74

Protein Annotations

MapMan:17.7.1.2.9	Gene3D:3.30.420.80	GO:A0A078FH47	UniProt:A0A078FH47	EnsemblPlants:CDY12287	ProteinID:CDY12287
ProteinID:CDY12287.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00061355001	InterPro:IPR036967	HAMAP:MF_01310
PFAM:PF00411	PANTHER:PTHR11759	PANTHER:PTHR11759:SF8	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137
UniParc:UPI0004EEBB07	SEG:seg	:	:	:	:

Description

BnaA09g24870DBnaA09g24870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FH47]

Coordinates

chrLK032019:+:442888..444245

Molecular Weight (calculated)

32317.2 Da

IEP (calculated)

11.042

GRAVY (calculated)

-0.682

Length

296 amino acids

Sequence
(BLAST)

001: MNGVSRHLRA SSLPSLIRSY GGIKSVCRFS SQSDGSSGGR FGEQGAVPGD SENKTGLPDP NASPSKRNGS SSFTSFSEMR SGLLNKIGDG GYSAPPTFRN
101: PLRSRLPNTL PSQSGQEGLP SYQSFTQSNL LKDNFRTGGI SKDLDFVRGV IEEDEVRRAT GLFSHFHRPN LETNADIIHI KLLRNNTFVT VTDSKGNVKC
201: KATSGSLPDL KGGRKMTSYT ADATAENIGR RVKAMGLKSV VVKVNGFTHF KKKRNAIVAF RSGYSNSRND QNPIVYIEDT TRKAHNGCRL PRKRRV

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.