CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38700	Soybean	mitochondrion	74.12	76.6
Solyc08g075720.1.1	Tomato	cytosol	29.12	63.46
VIT_05s0062g00880.t01	Wine grape	mitochondrion	32.65	56.06
GSMUA_AchrUn_...	Banana	cytosol	24.41	48.54
PGSC0003DMT400079312	Potato	mitochondrion	32.94	48.07
CDY63075	Canola	mitochondrion	31.47	36.64
CDY12287	Canola	mitochondrion	31.76	36.49
Bra023208.1-P	Field mustard	mitochondrion	31.76	34.95
AT1G31817.1	Thale cress	mitochondrion	32.06	34.71
Zm00001d009476_P001	Maize	mitochondrion	23.24	31.35
KXG22494	Sorghum	mitochondrion	22.94	30.59
HORVU2Hr1G124790.2	Barley	mitochondrion	21.18	28.92
TraesCS3B01G552000.1	Wheat	mitochondrion	21.76	28.24
TraesCS3D01G496900.1	Wheat	mitochondrion	21.18	27.48
Os03t0385900-01	Rice	plastid	26.18	26.81
HORVU3Hr1G109340.1	Barley	mitochondrion	21.18	26.37
TraesCS3A01G490900.1	Wheat	mitochondrion	21.18	26.28
TraesCS2A01G575400.1	Wheat	mitochondrion, plastid	20.88	26.01
TraesCS2A01G459000.1	Wheat	mitochondrion	13.82	25.0
TraesCS2D01G586100.1	Wheat	mitochondrion	20.29	24.13
TraesCS2B01G611800.2	Wheat	mitochondrion, plastid	21.18	23.45
CDY47693	Canola	plastid	21.76	20.9
HORVU0Hr1G005500.4	Barley	nucleus, plastid	15.29	17.05

Protein Annotations

EntrezGene:100783046	MapMan:17.7.1.2.9	Gene3D:3.30.420.80	UniProt:A0A0R0G495	EMBL:ACUP02010274	EnsemblPlantsGene:GLYMA_16G202700
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR036967	EnsemblPlants:KRH09204	ProteinID:KRH09204	ProteinID:KRH09204.1
HAMAP:MF_01310	PFAM:PF00411	PANTHER:PTHR11759	PANTHER:PTHR11759:SF8	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf
SUPFAM:SSF53137	UniParc:UPI00023D6609	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:36400780..36403019

Molecular Weight (calculated)

38793.5 Da

IEP (calculated)

10.555

GRAVY (calculated)

-0.925

Length

340 amino acids

Sequence
(BLAST)

001: MAVDLPSHHF SRRNPPFHST PPYDLAVYLK TTNQGFQKQP VTFWGLRDRN CGRIVSERHV RGFSSSNFDW RNLIVNENVN ADDSMQDAEN RNSEKWNNMR
101: LNMNADAKAP PNFVQNRGNI NSRSWNNMRQ NLNAPPNFMG NRENINSRSQ NNLGQNVDAN ADALPDFMQD KENINIGSKN DAETGWNSRP MDFVRGIIDE
201: DNFMKGSPFH QYQYEQDADF VHIKMLRNNT FVTVTDSQGN IKLSGSAGPL KDLKSGQKLS RYAAEATAEV VGRKARGLGL KSVVMKVNGF THFRRKRNAI
301: MSWKEGFTAG SRGDRNPIVY IEDTTRKPHN GCRLPKKRRI

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.