Factsheet for TraesCS2B01G611800.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31817.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT1G31817.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT1G31817.1	TraesCS1D01G223600.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G552000.1	Wheat	mitochondrion	78.18	91.6
HORVU2Hr1G124790.2	Barley	mitochondrion	73.29	90.36
TraesCS2D01G586100.1	Wheat	mitochondrion	80.78	86.71
GSMUA_AchrUn_...	Banana	cytosol	29.64	53.22
KXG22494	Sorghum	mitochondrion	35.18	42.35
Zm00001d009476_P001	Maize	mitochondrion	34.2	41.67
Solyc08g075720.1.1	Tomato	cytosol	19.54	38.46
VIT_05s0062g00880.t01	Wine grape	mitochondrion	23.13	35.86
Os03t0385900-01	Rice	plastid	36.16	33.43
PGSC0003DMT400079312	Potato	mitochondrion	20.52	27.04
CDY63075	Canola	mitochondrion	23.45	24.66
CDY12287	Canola	mitochondrion	23.13	23.99
AT1G31817.1	Thale cress	mitochondrion	24.1	23.57
KRH38700	Soybean	mitochondrion	24.76	23.1
Bra023208.1-P	Field mustard	mitochondrion	23.13	22.98
KRH09204	Soybean	cytosol	23.45	21.18
CDY47693	Canola	plastid	19.54	16.95

Protein Annotations

MapMan:17.7.1.2.9	Gene3D:3.30.420.80	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036967	HAMAP:MF_01310
PFAM:PF00411	PANTHER:PTHR11759	PANTHER:PTHR11759:SF8	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137
EnsemblPlantsGene:TraesCS2B01G611800	EnsemblPlants:TraesCS2B01G611800.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:+:790751095..790752510

Molecular Weight (calculated)

32191.0 Da

IEP (calculated)

11.939

GRAVY (calculated)

-0.446

Length

307 amino acids

Sequence
(BLAST)

001: MAARALGLAG RALLRPLSSP GAQRLLSSDK VRSPAPHPSL PSIAFPRKKP DTDPSNSQHD GSQGPLEGLV NAGDPMSRLI MQARNQTGGG FSPQFAENGF
101: TAGGFRMGGN GFTAGGGRMA GNGFTAGDGR MGVNGFTAGD SRMGGIGFTA GGARMGGNGF TAGGGRSGRF NMEMLRPAGA PRVKRDVLHV TLKGKKTFVT
201: VTDVKGNRKA GASAGCLEDR KGRSRLARYA GEATGEHMGR VASKIGLKSV VVKVKGYSFF RKKKKVIMGF ADGFRGERVR TPSPIMYVHD VTQLAHNGCR
301: LPKKVRK

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.