Factsheet for Bra023208.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005852.1-P
Bra009112.1-P
Bra028759.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31817.1	Bra005852.1-P	AT5G05410.1	18552202
AT1G31817.1	Bra009112.1-P	AT5G05410.1	18552202
AT1G31817.1	Bra028759.1-P	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12287	Canola	mitochondrion	87.38	91.22
AT1G31817.1	Thale cress	mitochondrion	66.02	64.97
Solyc08g075720.1.1	Tomato	cytosol	28.48	56.41
VIT_05s0062g00880.t01	Wine grape	mitochondrion	32.69	51.01
PGSC0003DMT400079312	Potato	mitochondrion	31.72	42.06
GSMUA_AchrUn_...	Banana	cytosol	22.65	40.94
KRH38700	Soybean	mitochondrion	35.6	33.43
KRH09204	Soybean	cytosol	34.95	31.76
Zm00001d009476_P001	Maize	mitochondrion	22.33	27.38
HORVU2Hr1G124790.2	Barley	mitochondrion	21.68	26.91
KXG22494	Sorghum	mitochondrion	22.01	26.67
TraesCS3B01G552000.1	Wheat	mitochondrion	22.33	26.34
HORVU3Hr1G109340.1	Barley	mitochondrion	22.65	25.64
TraesCS2A01G575400.1	Wheat	mitochondrion, plastid	22.33	25.27
TraesCS3D01G496900.1	Wheat	mitochondrion	21.36	25.19
TraesCS2A01G459000.1	Wheat	mitochondrion	14.89	24.47
TraesCS3A01G490900.1	Wheat	mitochondrion	21.68	24.45
Os03t0385900-01	Rice	plastid	25.24	23.49
TraesCS2B01G611800.2	Wheat	mitochondrion, plastid	22.98	23.13
TraesCS2D01G586100.1	Wheat	mitochondrion	21.04	22.73
HORVU0Hr1G005500.4	Barley	nucleus, plastid	15.53	15.74

Protein Annotations

MapMan:17.7.1.2.9	Gene3D:3.30.420.80	EnsemblPlantsGene:Bra023208	EnsemblPlants:Bra023208.1	EnsemblPlants:Bra023208.1-P	GO:GO:0000741
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0019538	GO:GO:0030154
InterPro:IPR036967	UniProt:M4E357	HAMAP:MF_01310	PFAM:PF00411	PANTHER:PTHR11759	PANTHER:PTHR11759:SF8
InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0002542375	SEG:seg	:

Description

AT1G31817 (E=6e-111) NFD3 | NFD3 (NUCLEAR FUSION DEFECTIVE 3); structural constituent of ribosome

Coordinates

chrA09:+:20699442..20700553

Molecular Weight (calculated)

33502.5 Da

IEP (calculated)

10.933

GRAVY (calculated)

-0.661

Length

309 amino acids

Sequence
(BLAST)

001: MNGVSRHLRA SPLPSLIRSY GGINSVCRFS SQSDGSSGGR FGEKGPVPGD SENKSGLPDP NASPSKSFSE IKAGLLNTGG NGSSSFTSFS EMRSGLLNKI
101: GDGGYSAPPT FRNPLRSRLP NTLPSQSGQE GLPSYQSFTQ SNLLKDNFRT GGISKDLDFV RGVIEEDEGR RATGLFSHFH RPNLETNADI IHIKLLRNNT
201: FVTVTDSKGN VKCKATSGSL PDLKGGRKMT SYTADATAEN IGRRVKAMGL KSVVVKVNGF THFKKKRNAI VAFRSGYSNS RNDQNPIVYI EDTTRKAHNG
301: CRLPRKRRV

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.