Factsheet for HORVU2Hr1G124790.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060490.5
HORVU6Hr1G050500.2
HORVU6Hr1G050520.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31817.1	HORVU1Hr1G060490.5	AT5G05410.1	18552202
AT1G31817.1	HORVU6Hr1G050500.2	AT5G05410.1	18552202
AT1G31817.1	HORVU6Hr1G050520.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G552000.1	Wheat	mitochondrion	92.37	87.79
TraesCS3D01G496900.1	Wheat	mitochondrion	91.57	87.02
TraesCS3A01G490900.1	Wheat	mitochondrion	91.57	83.21
HORVU3Hr1G109340.1	Barley	mitochondrion	89.16	81.32
TraesCS2D01G586100.1	Wheat	mitochondrion	90.76	79.02
TraesCS2B01G611800.2	Wheat	mitochondrion, plastid	90.36	73.29
GSMUA_AchrUn_...	Banana	cytosol	36.55	53.22
KXG22494	Sorghum	mitochondrion	41.37	40.39
Zm00001d009476_P001	Maize	mitochondrion	40.56	40.08
Solyc08g075720.1.1	Tomato	cytosol	24.1	38.46
VIT_05s0062g00880.t01	Wine grape	mitochondrion	28.11	35.35
HORVU0Hr1G005500.4	Barley	nucleus, plastid	38.96	31.8
Os03t0385900-01	Rice	plastid	41.77	31.33
PGSC0003DMT400079312	Potato	mitochondrion	24.9	26.61
CDY63075	Canola	mitochondrion	27.31	23.29
KRH38700	Soybean	mitochondrion	30.52	23.1
CDY12287	Canola	mitochondrion	27.31	22.97
AT1G31817.1	Thale cress	mitochondrion	28.92	22.93
Bra023208.1-P	Field mustard	mitochondrion	26.91	21.68
KRH09204	Soybean	cytosol	28.92	21.18
CDY47693	Canola	plastid	24.9	17.51

Protein Annotations

MapMan:17.7.1.2.9	Gene3D:3.30.420.80	EMBL:AK354647	UniProt:F2CSP5	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:HORVU2Hr1G124790	EnsemblPlants:HORVU2Hr1G124790.2	InterPro:IPR036967	HAMAP:MF_01310	PFAM:PF00411	PANTHER:PTHR11759
PANTHER:PTHR11759:SF8	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI00020047D2	SEG:seg

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CSP5]

Coordinates

chrchr2H:-:759146767..759148658

Molecular Weight (calculated)

26369.3 Da

IEP (calculated)

12.098

GRAVY (calculated)

-0.455

Length

249 amino acids

Sequence
(BLAST)

001: MAARALGLAG RALLRPISSP GSHRLLSTDK SPLQGLANAG DPMSRPIMQA RNQTDGGFSR LAENRFTAGG GRMGGNGFTA GGGRMGGNGF AVGGGRMGGN
101: GFTADGGRPG RFNMEMLRPA GAPRVKRDVL HVTLKGKKTF VTVTDVKGNR KAGASAGCLE DRKGRSRLAR YAGEATGEHM GRVASKIGLK SVVVKVKGYS
201: FFRKKKKVIM GFADGFRGER VRTPSPIMYV HDVTQLAHNG CRLPKKVRK

Best Arabidopsis Sequence Match ( AT1G31817.1 )
(BLAST)

001: MNGVSRHLRA SSLLSLIRSY GGINSVCRFS SQSDGFSGGR FREQVPVSGE SANNSGLSNT GRIGSSPEPN PSTLRTFGDM KAGLLNRGVN GFSAPNAPPT
101: FKSSLRSRLP NSLPDQFGQT NPGLPNTGGS GFSAPSLSSY ENFTQSSSLL KENSRSGGKS SDLDFVREVI EDEGRRTAGI FSHFQRPNLE TNADIIHIKM
201: LRNNTFVTVT DSKGNVKCKA TSGSLPDLKG GRKMTNYTAD ATAENIGRRA KAMGLKSVVV KVNGFTHFGK KKKAIIAFRD GFTNSRSDQN PIVYIEDTTR
301: KAHNGCRLPR KRRV

Arabidopsis Description

NFD3Probable ribosomal protein S11, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.