Factsheet for HORVU2Hr1G023120.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G060490.5
HORVU6Hr1G050500.2
HORVU6Hr1G050520.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49080.1	HORVU1Hr1G060490.5	AT5G05410.1	18552202
AT3G49080.1	HORVU6Hr1G050500.2	AT5G05410.1	18552202
AT3G49080.1	HORVU6Hr1G050520.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G154400.1	Wheat	mitochondrion	91.8	93.24
TraesCS2D01G133900.1	Wheat	mitochondrion	90.91	92.76
TraesCS2A01G131800.1	Wheat	mitochondrion	91.57	92.6
Os07t0658200-02	Rice	mitochondrion	66.96	72.77
EER99838	Sorghum	mitochondrion	63.41	69.42
Zm00001d022386_P001	Maize	mitochondrion	60.09	65.46
VIT_06s0080g00440.t01	Wine grape	mitochondrion	42.57	53.78
Solyc10g080160.1.1	Tomato	nucleus	44.35	51.95
PGSC0003DMT400060895	Potato	mitochondrion, plastid	44.12	51.55
GSMUA_Achr11P...	Banana	mitochondrion	46.56	49.18
CDY08108	Canola	mitochondrion	41.02	48.05
CDY05901	Canola	mitochondrion, plastid	40.58	47.78
KRH24085	Soybean	mitochondrion	42.79	46.96
KRH29054	Soybean	mitochondrion	43.02	46.75
Bra018009.1-P	Field mustard	mitochondrion	40.8	45.32
AT3G49080.1	Thale cress	mitochondrion	42.13	44.19
HORVU5Hr1G098340.3	Barley	plastid	13.75	23.31

Protein Annotations

MapMan:17.7.1.2.7	Gene3D:3.30.230.10	UniProt:A0A287HCX8	ncoils:Coil	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005840	GO:GO:0006412	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009555	GO:GO:0009559	GO:GO:0009987	GO:GO:0019538	GO:GO:0030154	GO:GO:0048229
EnsemblPlantsGene:HORVU2Hr1G023120	EnsemblPlants:HORVU2Hr1G023120.1	InterPro:IPR014721	HAMAP:MF_00532_B	PFAM:PF00380	ScanProsite:PS00360
PANTHER:PTHR21569	PANTHER:PTHR21569:SF1	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS
InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211	UniParc:UPI000B471A2C	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:+:68478924..68481989

Molecular Weight (calculated)

49481.2 Da

IEP (calculated)

6.815

GRAVY (calculated)

-0.644

Length

451 amino acids

Sequence
(BLAST)

001: TNGRRPPPRT TMLLRRLLHP SHHLRRGLQT LTTTNAAAAP STAHPLSAPL PFRRLPARLL SPRLLSTSGG DDDTRRPWAF TQDSEDPDPF ADVDPAAAVP
101: IPGEAPLGSS AVVEDPWSKD FRAEDGDKAD VFEEIYKDAA AAAPTARKAP PAQPWKLDSE DEKDDPFAAR KDAAAAAPSA RKAAPAEPWS WDLKDETDDP
201: FAAAVGVEGI ADEGTQIEEL VDGKEEDAER QRQENTAREQ QLMETLKGPD RAFGDLISAS GITEDMIDSL ILLKDARGIP GLPPLSEIQD RAIQKMNATS
301: SRAEVERQMQ EEIAKARVRQ VDEKGRAYGT GRRKCSIARV WIQPGDGKFV VNDKQFDAYF PILDHRADLL RPFTVTKTLG LWDVACTVKG GGVSGQVGAV
401: RLGISRALQN WEPGLHPYLK SAGYLTRDSR VVERKKPGKA KARKSFQWVK R

Best Arabidopsis Sequence Match ( AT3G49080.1 )
(BLAST)

001: MLSRLFLRHS NLRFVTLVSS KSNSQIFSSF IRPLSTNSSG GGGNGDGNGR NRNDVPWSFT GVNDDKSGPF SSDDSFGSSG VAGSGLPGGE GKWPEEPKRW
101: NIKEEEEKVV FDTGGEVGQG IETSRERRGN EWEETKRWDM KEGEEKVVFG GGGDEVDGFG IRGEVKSNEW DVSKPWNLKE EEEGVVFDTG GEVPFSFENS
201: LEMAEEERVK KELIEKEEKE LLEVIKGPDR AFGDLIAKSG ITDEMLDSLI ALKDFQGVEG LPPLTEIENL RREKSSKKSS RAEIELQMQE DIAKARVRQV
301: DETGRAYGTG RRKCSIARVW IQPGEGKFQV NEKEFDVYFP MLDHRAALLR PLAETKTLGR WDIKCTVKGG GTTGQVGAIQ LGISRALQNW EPDMRTSLRA
401: AGFLTRDSRV VERKKPGKAK ARKSFQWVKR

Arabidopsis Description

RPS9M30S ribosomal protein S9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.