Factsheet for Bra018009.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005852.1-P
Bra009112.1-P
Bra028759.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49080.1	Bra005852.1-P	AT5G05410.1	18552202
AT3G49080.1	Bra009112.1-P	AT5G05410.1	18552202
AT3G49080.1	Bra028759.1-P	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08108	Canola	mitochondrion	92.12	97.14
CDY05901	Canola	mitochondrion, plastid	88.18	93.47
AT3G49080.1	Thale cress	mitochondrion	70.94	66.98
VIT_06s0080g00440.t01	Wine grape	mitochondrion	50.49	57.42
Solyc10g080160.1.1	Tomato	nucleus	49.26	51.95
PGSC0003DMT400060895	Potato	mitochondrion, plastid	49.01	51.55
KRH24085	Soybean	mitochondrion	50.74	50.12
KRH29054	Soybean	mitochondrion	50.49	49.4
Os07t0658200-02	Rice	mitochondrion	47.04	46.02
EER99838	Sorghum	mitochondrion	45.57	44.9
Zm00001d022386_P001	Maize	mitochondrion	45.57	44.69
GSMUA_Achr11P...	Banana	mitochondrion	44.83	42.62
TraesCS2D01G133900.1	Wheat	mitochondrion	46.31	42.53
TraesCS2B01G154400.1	Wheat	mitochondrion	46.31	42.34
TraesCS2A01G131800.1	Wheat	mitochondrion	46.31	42.15
HORVU2Hr1G023120.1	Barley	mitochondrion	45.32	40.8
Bra003776.1-P	Field mustard	cytosol	13.79	38.62
Bra015878.1-P	Field mustard	plastid	16.26	31.28

Protein Annotations

MapMan:17.7.1.2.7	Gene3D:3.30.230.10	EnsemblPlantsGene:Bra018009	EnsemblPlants:Bra018009.1	EnsemblPlants:Bra018009.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006412	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009555	GO:GO:0009559	GO:GO:0009987	GO:GO:0019538
GO:GO:0030154	GO:GO:0030529	GO:GO:0048229	InterPro:IPR014721	UniProt:M4DNC2	PFAM:PF00380
ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF1	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9
InterPro:Ribosomal_S9_CS	SUPFAM:SSF54211	UniParc:UPI000253F22E	SEG:seg	:	:

Description

AT3G49080 (E=1e-109) | ribosomal protein S9 family protein

Coordinates

chrA06:+:9496143..9497872

Molecular Weight (calculated)

44786.0 Da

IEP (calculated)

9.021

GRAVY (calculated)

-0.574

Length

406 amino acids

Sequence
(BLAST)

001: MLSRLFQRSS NLRLATLVSS KSNSQIFSSF IRPLSTNSTG GGNDNGNGGN RNDAPLSFSG VNDGKSDPFS SSGFGSVGGD GKWPKRWNMK EEGDEKGVFG
101: GNEGEVSNGF GDVKSSGWDV PSKPWDLKEE EEDGKVVFDT SGEMPVSFDD SLVNEEEERA KKQVFEREEK ELTEVIKGPD RAFGDLIAKS GITDEMLDSL
201: IALKDFQGVQ GLPPLTEIEN LRREKSSKKS SRAEIELQMQ EEIAKARVRQ VDEAGRAYGT GRRKCSIARV WIVPGKGKFL VNDKEFDVYF PMLDHRAALL
301: RPLAETKTLG SWDINCTVTG GGTTGQVGAI QLGISRALQN WEPDMRTALR AGSIVRVRLI VLDVHHLISN LGYMFAAGFL TRDSRVVERK KPGKAKARKS
401: FQWVKR

Best Arabidopsis Sequence Match ( AT3G49080.1 )
(BLAST)

001: MLSRLFLRHS NLRFVTLVSS KSNSQIFSSF IRPLSTNSSG GGGNGDGNGR NRNDVPWSFT GVNDDKSGPF SSDDSFGSSG VAGSGLPGGE GKWPEEPKRW
101: NIKEEEEKVV FDTGGEVGQG IETSRERRGN EWEETKRWDM KEGEEKVVFG GGGDEVDGFG IRGEVKSNEW DVSKPWNLKE EEEGVVFDTG GEVPFSFENS
201: LEMAEEERVK KELIEKEEKE LLEVIKGPDR AFGDLIAKSG ITDEMLDSLI ALKDFQGVEG LPPLTEIENL RREKSSKKSS RAEIELQMQE DIAKARVRQV
301: DETGRAYGTG RRKCSIARVW IQPGEGKFQV NEKEFDVYFP MLDHRAALLR PLAETKTLGR WDIKCTVKGG GTTGQVGAIQ LGISRALQNW EPDMRTSLRA
401: AGFLTRDSRV VERKKPGKAK ARKSFQWVKR

Arabidopsis Description

RPS9M30S ribosomal protein S9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.