Factsheet for TraesCS2D01G133900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49080.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT3G49080.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT3G49080.1	TraesCS1D01G223600.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G154400.1	Wheat	mitochondrion	97.96	97.52
TraesCS2A01G131800.1	Wheat	mitochondrion	97.74	96.86
HORVU2Hr1G023120.1	Barley	mitochondrion	92.76	90.91
Os07t0658200-02	Rice	mitochondrion	71.04	75.66
EER99838	Sorghum	mitochondrion	66.74	71.6
Zm00001d022386_P001	Maize	mitochondrion	62.9	67.15
VIT_06s0080g00440.t01	Wine grape	mitochondrion	43.44	53.78
Solyc10g080160.1.1	Tomato	nucleus	45.25	51.95
PGSC0003DMT400060895	Potato	mitochondrion, plastid	45.02	51.55
GSMUA_Achr11P...	Banana	mitochondrion	48.19	49.88
CDY08108	Canola	mitochondrion	42.53	48.83
CDY05901	Canola	mitochondrion, plastid	42.08	48.56
KRH24085	Soybean	mitochondrion	43.89	47.2
KRH29054	Soybean	mitochondrion	43.89	46.75
Bra018009.1-P	Field mustard	mitochondrion	42.53	46.31
AT3G49080.1	Thale cress	mitochondrion	43.21	44.42
TraesCS5D01G414600.1	Wheat	plastid	13.8	27.11

Protein Annotations

MapMan:17.7.1.2.7	Gene3D:3.30.230.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840
GO:GO:0006412	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009555
GO:GO:0009559	GO:GO:0009987	GO:GO:0019538	GO:GO:0030154	GO:GO:0048229	InterPro:IPR014721
HAMAP:MF_00532_B	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF1	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211	EnsemblPlantsGene:TraesCS2D01G133900
EnsemblPlants:TraesCS2D01G133900.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:78764668..78767368

Molecular Weight (calculated)

48445.2 Da

IEP (calculated)

5.865

GRAVY (calculated)

-0.568

Length

442 amino acids

Sequence
(BLAST)

001: MLLRRLLHPS HHLRRGLQTL TTTTNAAAAP PTPHPLSAPL PFRRLPARLL SPRLLSTSGG DDDTRRPWAF TQDSGDPDPF ADVDPAAAVP GEAPLGSSAV
101: VEGPWSKDFR AEDSDKADVF EEIYKDAAAA APAVRKAAPA EPWTWDLEGE KDDPFAARKD AAAAAPTARK AAPAEPWTWD LEDEKDDPFA AAVLDVGLEG
201: IADEGAQIEE LVDGKEEDAE RQRQEDKARE QQLMETLKGP DRAFGDLISA SGITEEMIDS LILLKDARGI PGLPPLSEIQ DRAIQKMNAT SSRAEVERQM
301: QEEIAKARVR QVDEKGRAYG TGKRKCSIAR VWIQPGDGKF VVNDKQFDAY FPILDHRADL LRPFTVTKTL GLWDVACTVK GGGVSGQVGA VRLGISRALQ
401: NWEPGLRPYL KAAGYLTRDS RVVERKKPGK AKARKSFQWV KR

Best Arabidopsis Sequence Match ( AT3G49080.1 )
(BLAST)

001: MLSRLFLRHS NLRFVTLVSS KSNSQIFSSF IRPLSTNSSG GGGNGDGNGR NRNDVPWSFT GVNDDKSGPF SSDDSFGSSG VAGSGLPGGE GKWPEEPKRW
101: NIKEEEEKVV FDTGGEVGQG IETSRERRGN EWEETKRWDM KEGEEKVVFG GGGDEVDGFG IRGEVKSNEW DVSKPWNLKE EEEGVVFDTG GEVPFSFENS
201: LEMAEEERVK KELIEKEEKE LLEVIKGPDR AFGDLIAKSG ITDEMLDSLI ALKDFQGVEG LPPLTEIENL RREKSSKKSS RAEIELQMQE DIAKARVRQV
301: DETGRAYGTG RRKCSIARVW IQPGEGKFQV NEKEFDVYFP MLDHRAALLR PLAETKTLGR WDIKCTVKGG GTTGQVGAIQ LGISRALQNW EPDMRTSLRA
401: AGFLTRDSRV VERKKPGKAK ARKSFQWVKR

Arabidopsis Description

RPS9M30S ribosomal protein S9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.