CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49080.1	CDX70151	AT5G05410.1	18552202
AT3G49080.1	CDX98843	AT5G05410.1	18552202
AT3G49080.1	CDY04950	AT5G05410.1	18552202
AT3G49080.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08108	Canola	mitochondrion	93.47	92.99
Bra018009.1-P	Field mustard	mitochondrion	93.47	88.18
AT3G49080.1	Thale cress	mitochondrion	76.76	68.37
VIT_06s0080g00440.t01	Wine grape	mitochondrion	54.57	58.54
Solyc10g080160.1.1	Tomato	nucleus	51.96	51.69
PGSC0003DMT400060895	Potato	mitochondrion, plastid	51.7	51.3
KRH24085	Soybean	mitochondrion	54.57	50.85
KRH29054	Soybean	mitochondrion	54.05	49.88
Os07t0658200-02	Rice	mitochondrion	49.87	46.02
EER99838	Sorghum	mitochondrion	48.04	44.66
Zm00001d022386_P001	Maize	mitochondrion	48.04	44.44
GSMUA_Achr11P...	Banana	mitochondrion	47.52	42.62
TraesCS2D01G133900.1	Wheat	mitochondrion	48.56	42.08
TraesCS2B01G154400.1	Wheat	mitochondrion	48.56	41.89
TraesCS2A01G131800.1	Wheat	mitochondrion	48.56	41.7
HORVU2Hr1G023120.1	Barley	mitochondrion	47.78	40.58
CDX85869	Canola	cytosol, endoplasmic reticulum, plastid	7.05	39.13
CDX85870	Canola	plastid	17.49	31.75
CDX73129	Canola	plastid	16.97	30.81
CDY64476	Canola	plastid	16.97	30.66
CDX68153	Canola	plastid	16.71	30.19

Protein Annotations

MapMan:17.7.1.2.7	Gene3D:3.30.230.10	GO:A0A078EXK0	EnsemblPlants:CDY05901	ProteinID:CDY05901	ProteinID:CDY05901.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00121703001	InterPro:IPR014721	HAMAP:MF_00532_B
PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF1	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211	UniParc:UPI0004EDB6EE	SEG:seg

Description

BnaC08g20780D

Coordinates

chrLK031966:-:386302..388435

Molecular Weight (calculated)

42306.7 Da

IEP (calculated)

8.179

GRAVY (calculated)

-0.701

Length

383 amino acids

Sequence
(BLAST)

001: MLPRLFLRSS NLRLATLVSS KSNSQIFSSF IRPLSTNSSG GGGGNDNGNG GNRNDAPWSF SGVNDGKSDP FSSFESGSPG GDGKWPKEEP KRWNMKEEGD
101: EKAVFGDVSN GFGDVKSSGW DVSSKPWDLK EDEEDGKVVF DTSGEMPVSF DNSLVNEEEE RAKKELFEKE EKELTEVIKG PDRAFGDLIA KSGITDEMLD
201: SLIALKDFQG VQGLPPLTEI ENLRREKSSK KSSRAEIELQ MQEEIAKARV RQVDEAGRAY GTGRRKCSIA RVWIVPGKGK FLVNDKEFDV YFPMLDHRAA
301: LLRPLAETKT LGSWDINCTV TGGGTTGQVG AIQLGISRAL QNWEPDMRTA LRAAGFLTRD SRVVERKKPG KAKARKSFQW VKR

Best Arabidopsis Sequence Match ( AT3G49080.1 )
(BLAST)

001: MLSRLFLRHS NLRFVTLVSS KSNSQIFSSF IRPLSTNSSG GGGNGDGNGR NRNDVPWSFT GVNDDKSGPF SSDDSFGSSG VAGSGLPGGE GKWPEEPKRW
101: NIKEEEEKVV FDTGGEVGQG IETSRERRGN EWEETKRWDM KEGEEKVVFG GGGDEVDGFG IRGEVKSNEW DVSKPWNLKE EEEGVVFDTG GEVPFSFENS
201: LEMAEEERVK KELIEKEEKE LLEVIKGPDR AFGDLIAKSG ITDEMLDSLI ALKDFQGVEG LPPLTEIENL RREKSSKKSS RAEIELQMQE DIAKARVRQV
301: DETGRAYGTG RRKCSIARVW IQPGEGKFQV NEKEFDVYFP MLDHRAALLR PLAETKTLGR WDIKCTVKGG GTTGQVGAIQ LGISRALQNW EPDMRTSLRA
401: AGFLTRDSRV VERKKPGKAK ARKSFQWVKR

Arabidopsis Description

RPS9M30S ribosomal protein S9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.