CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
endoplasmic reticulum 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73129	Canola	plastid	59.42	19.43
CDX85870	Canola	plastid	59.42	19.43
CDX68153	Canola	plastid	59.42	19.34
CDY64476	Canola	plastid	59.42	19.34
CDY05901	Canola	mitochondrion, plastid	39.13	7.05
CDY08108	Canola	mitochondrion	39.13	7.01

Protein Annotations

Gene3D:3.30.230.10	MapMan:35.2	GO:A0A078DBX7	EnsemblPlants:CDX85869	ProteinID:CDX85869	ProteinID:CDX85869.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00143666001	InterPro:IPR014721	PFAM:PF00380	PANTHER:PTHR21569
PANTHER:PTHR21569:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	SUPFAM:SSF54211	UniParc:UPI0004EE3885

Description

BnaC06g22650D

Coordinates

chrLK031843:-:405540..408453

Molecular Weight (calculated)

7810.7 Da

IEP (calculated)

10.553

GRAVY (calculated)

-0.510

Length

69 amino acids

Sequence
(BLAST)

1: MCLPKAFVTW LSLPDDMQYP NCSLLPTQSN CTCRSPLKKE GLLTSDARVV ERKKVGLKKA RKAPQFSKR

Best Arabidopsis Sequence Match ( AT1G74970.1 )
(BLAST)

001: MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE
101: GTGKVIINYR DAKEYLQGNP LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG LLTRDARVVE RKKAGLKKAR
201: KAPQFSKR

Arabidopsis Description

RPS930S ribosomal protein S9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.