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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX73129 Canola plastid 95.26 95.26
CDX68153 Canola plastid 87.2 86.79
CDY64476 Canola plastid 83.89 83.49
AT1G74970.1 Thale cress plastid 80.57 81.73
VIT_18s0001g11750.t01 Wine grape plastid 75.36 76.08
KRH15268 Soybean nucleus 72.99 74.4
KRH05768 Soybean plastid 72.04 73.43
PGSC0003DMT400043484 Potato mitochondrion, plastid 68.25 68.57
GSMUA_Achr2P17190_001 Banana plastid 68.25 65.16
Solyc04g079790.2.1 Tomato plastid 68.25 60.76
EER90823 Sorghum plastid 64.45 60.71
CDX85869 Canola cytosol, endoplasmic reticulum, plastid 19.43 59.42
TraesCS5A01G404500.1 Wheat plastid 62.56 58.67
TraesCS5D01G414600.1 Wheat plastid 62.09 58.22
TraesCS5B01G409400.1 Wheat plastid 62.09 57.96
Zm00001d034192_P001 Maize plastid 60.66 57.14
Os03t0769100-01 Rice plastid 58.77 55.61
HORVU5Hr1G098340.3 Barley plastid 57.82 45.86
CDY05901 Canola mitochondrion, plastid 31.75 17.49
CDY08108 Canola mitochondrion 31.75 17.4
Protein Annotations
MapMan:17.7.2.2.9Gene3D:3.30.230.10GO:A0A078D9F0EnsemblPlants:CDX85870ProteinID:CDX85870ProteinID:CDX85870.1
GO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00143667001InterPro:IPR014721HAMAP:MF_00532_BPFAM:PF00380
ScanProsite:PS00360PANTHER:PTHR21569PANTHER:PTHR21569:SF11InterPro:Ribosomal_S5_D2-typ_foldInterPro:Ribosomal_S5_D2-typ_fold_subgrInterPro:Ribosomal_S9
InterPro:Ribosomal_S9_CSInterPro:Ribosomal_S9_bac/plastidSUPFAM:SSF54211UniParc:UPI0004EF3076SEG:seg:
Description
BnaC06g22640D
Coordinates
chrLK031843:-:408731..409979
Molecular Weight (calculated)
22764.6 Da
IEP (calculated)
10.969
GRAVY (calculated)
-0.165
Length
211 amino acids
Sequence
(BLAST)
001: MALSVSNLAS SLSSLSFSSQ VSQGPNTLSF SWTNSLFSLP AKSARRASLS VTATVAAPAE VAEDDTMELK KYVKSRLPGG FAAQKIIGTG RRKCAIARVV
101: LQEGTGKVII NYRDAKEYLQ GNPLWLQYVK VPLVTLGYEN SYDVFVKAHG GGLSGQAQAI TLGVARALLK VSADHRSPLK KEGLLTRDAR VVERKKVGLK
201: KARKAPQFSK R
Best Arabidopsis Sequence Match ( AT1G74970.1 )
(BLAST)
001: MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE
101: GTGKVIINYR DAKEYLQGNP LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG LLTRDARVVE RKKAGLKKAR
201: KAPQFSKR
Arabidopsis Description
RPS930S ribosomal protein S9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ27]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.