CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05768	Soybean	plastid	91.3	91.3
Bra003776.1-P	Field mustard	cytosol	61.35	87.59
VIT_18s0001g11750.t01	Wine grape	plastid	77.78	77.03
CDX85870	Canola	plastid	74.4	72.99
CDX73129	Canola	plastid	73.43	72.04
CDX68153	Canola	plastid	73.43	71.7
Bra015878.1-P	Field mustard	plastid	72.46	71.09
AT1G74970.1	Thale cress	plastid	71.01	70.67
CDY64476	Canola	plastid	71.01	69.34
PGSC0003DMT400043484	Potato	mitochondrion, plastid	68.6	67.62
GSMUA_Achr2P17190_001	Banana	plastid	71.01	66.52
Solyc04g079790.2.1	Tomato	plastid	68.12	59.49
EER90823	Sorghum	plastid	60.39	55.8
TraesCS5D01G414600.1	Wheat	plastid	59.42	54.67
Zm00001d034192_P001	Maize	plastid	58.94	54.46
TraesCS5B01G409400.1	Wheat	plastid	59.42	54.42
TraesCS5A01G404500.1	Wheat	plastid	58.94	54.22
Os03t0769100-01	Rice	plastid	57.49	53.36
HORVU5Hr1G098340.3	Barley	plastid	57.0	44.36
KRH24085	Soybean	mitochondrion	31.88	16.06
KRH29054	Soybean	mitochondrion	31.88	15.9

Protein Annotations

EntrezGene:100811697	MapMan:17.7.2.2.9	Gene3D:3.30.230.10	EMBL:ACUP02008570	EnsemblPlantsGene:GLYMA_14G078100	GO:GO:0000312
GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	UniProt:I1M8G8	InterPro:IPR014721	EnsemblPlants:KRH15268
ProteinID:KRH15268	ProteinID:KRH15268.1	HAMAP:MF_00532_B	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569
PANTHER:PTHR21569:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid
SUPFAM:SSF54211	UniParc:UPI0001BA8912	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:+:6611279..6614849

Molecular Weight (calculated)

22554.3 Da

IEP (calculated)

10.708

GRAVY (calculated)

-0.195

Length

207 amino acids

Sequence
(BLAST)

001: MAVSLSALTT SLSSLSFSSH ISQRPCTLSF ARTESLSLSV SPFPKTPSSL VVTATALAEP ETEDLKKYVK SRLPGGFAAQ TIIGTGRRKS AIARVVLQEG
101: TGKFIINYRD AKEYLQGNPL WLQYIKVPLI TLGYESNYDV FVKAEGGGLS GQAQAISLGI ARALLKVSED HRAPLRQEGL LTRDSRVVER KKVGLKKARK
201: APQYSKR

Best Arabidopsis Sequence Match ( AT1G74970.1 )
(BLAST)

001: MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE
101: GTGKVIINYR DAKEYLQGNP LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG LLTRDARVVE RKKAGLKKAR
201: KAPQFSKR

Arabidopsis Description

RPS930S ribosomal protein S9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.