Factsheet for PGSC0003DMT400043484

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079790.2.1	Tomato	plastid	97.62	86.5
Bra003776.1-P	Field mustard	cytosol	57.14	82.76
VIT_18s0001g11750.t01	Wine grape	plastid	68.57	68.9
KRH15268	Soybean	nucleus	67.62	68.6
CDX85870	Canola	plastid	68.57	68.25
KRH05768	Soybean	plastid	67.14	68.12
CDX68153	Canola	plastid	68.57	67.92
CDX73129	Canola	plastid	68.1	67.77
Bra015878.1-P	Field mustard	plastid	68.1	67.77
AT1G74970.1	Thale cress	plastid	66.67	67.31
CDY64476	Canola	plastid	67.14	66.51
GSMUA_Achr2P17190_001	Banana	plastid	63.33	60.18
TraesCS5A01G404500.1	Wheat	plastid	59.05	55.11
EER90823	Sorghum	plastid	58.57	54.91
TraesCS5D01G414600.1	Wheat	plastid	58.57	54.67
TraesCS5B01G409400.1	Wheat	plastid	58.57	54.42
Zm00001d034192_P001	Maize	plastid	56.67	53.12
Os03t0769100-01	Rice	plastid	55.71	52.47
HORVU5Hr1G098340.3	Barley	plastid	55.71	43.98
PGSC0003DMT400060895	Potato	mitochondrion, plastid	31.43	17.1

Protein Annotations

EntrezGene:102590993	MapMan:17.7.2.2.9	Gene3D:3.30.230.10	GO:GO:0000312	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0030529
InterPro:IPR014721	UniProt:M1BEQ3	HAMAP:MF_00532_B	PFAM:PF00380	EnsemblPlantsGene:PGSC0003DMG400016883	PGSC:PGSC0003DMG400016883
EnsemblPlants:PGSC0003DMT400043484	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211	UniParc:UPI0002958376	RefSeq:XP_006366447.1
SEG:seg	:	:	:	:	:

Description

Ribosomal protein S9 [Source:PGSC_GENE;Acc:PGSC0003DMG400016883]

Coordinates

chr4:-:69117876..69120681

Molecular Weight (calculated)

22918.9 Da

IEP (calculated)

11.123

GRAVY (calculated)

-0.178

Length

210 amino acids

Sequence
(BLAST)

001: MAISVASLAS SFASLSFSSQ ISQKPYAVSL AHSKQFSFSL TSKIPRLVVS ASVAEAPETK ELETRENLLK LVKSRLPGGF AAQPIFGTGR RKSASARVVL
101: QEGSGKIIIN YRDAKEYLQG NPLWIQYVKT PLATLGYEAS YDIFVKVEGG GLSGQAQAIS LGIARALLKV SESHRKPLRV EGLLTRDARV VERKKVGLKK
201: ARKRPQFSKR

Best Arabidopsis Sequence Match ( AT1G74970.1 )
(BLAST)

001: MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE
101: GTGKVIINYR DAKEYLQGNP LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG LLTRDARVVE RKKAGLKKAR
201: KAPQFSKR

Arabidopsis Description

RPS930S ribosomal protein S9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.