Factsheet for Zm00001d034192_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 14675435
plastid: 14675435

plastid: 20089766
plastid: 22065420
plastid: 23198870

gfp PMID: 14675435

Z Ma, HK Dooner

Waksman Institute, Rutgers University, Piscataway, NJ 08855, USA.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90823	Sorghum	plastid	79.02	79.02
Bra003776.1-P	Field mustard	cytosol	50.89	78.62
TraesCS5D01G414600.1	Wheat	plastid	70.54	70.22
TraesCS5A01G404500.1	Wheat	plastid	70.54	70.22
TraesCS5B01G409400.1	Wheat	plastid	70.54	69.91
Os03t0769100-01	Rice	plastid	69.2	69.51
CDX73129	Canola	plastid	57.59	61.14
Bra015878.1-P	Field mustard	plastid	57.14	60.66
CDX85870	Canola	plastid	57.14	60.66
CDX68153	Canola	plastid	57.14	60.38
CDY64476	Canola	plastid	57.14	60.38
AT1G74970.1	Thale cress	plastid	55.8	60.1
VIT_18s0001g11750.t01	Wine grape	plastid	55.8	59.81
KRH05768	Soybean	plastid	54.46	58.94
KRH15268	Soybean	nucleus	54.46	58.94
PGSC0003DMT400043484	Potato	mitochondrion, plastid	53.12	56.67
GSMUA_Achr2P17190_001	Banana	plastid	55.36	56.11
HORVU5Hr1G098340.3	Barley	plastid	64.73	54.51
Solyc04g079790.2.1	Tomato	plastid	53.12	50.21
Zm00001d022386_P001	Maize	mitochondrion	24.55	13.29

Protein Annotations

MapMan:17.7.2.2.9	Gene3D:3.30.230.10	EntrezGene:732840	UniProt:B4FR40	EMBL:BT039578	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR014721	HAMAP:MF_00532_B	ProteinID:ONM09780.1	PFAM:PF00380
ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9
InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211	UniParc:UPI00017B7C97	EnsemblPlantsGene:Zm00001d034192	EnsemblPlants:Zm00001d034192_P001
EnsemblPlants:Zm00001d034192_T001	SEG:seg	:	:	:	:

Description

lethal embryo mutant130S ribosomal protein S9 chloroplastic

Coordinates

chr1:-:286208841..286210899

Molecular Weight (calculated)

24475.9 Da

IEP (calculated)

10.796

GRAVY (calculated)

-0.217

Length

224 amino acids

Sequence
(BLAST)

001: MALSVSSLAA ALSHLSLPST STPKPHPAPL LRLRSTYRRA VSLALRASAA EAAESFEADL PAEEVMAVEE EAEEDALSGI ALRKYVKQRL PGGFAAQRIT
101: ATGRRKTAIA RVVLQEGTGK VFINFRDAKE YLQGNPMWME YCKVPLMTLG FEKNYDVFVK VHGGGLSGQA QAICLGVARA LVKISNANRV PLKSEGLLTR
201: DTRIVERKKA GLKKARKRPQ FSKR

Best Arabidopsis Sequence Match ( AT1G74970.1 )
(BLAST)

001: MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE
101: GTGKVIINYR DAKEYLQGNP LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG LLTRDARVVE RKKAGLKKAR
201: KAPQFSKR

Arabidopsis Description

RPS930S ribosomal protein S9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.