Factsheet for Zm00001d022386_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010048_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49080.1	Zm00001d010048_P004	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99838	Sorghum	mitochondrion	84.54	84.95
Os07t0658200-02	Rice	mitochondrion	72.22	72.05
TraesCS2A01G131800.1	Wheat	mitochondrion	67.87	63.0
TraesCS2D01G133900.1	Wheat	mitochondrion	67.15	62.9
TraesCS2B01G154400.1	Wheat	mitochondrion	67.15	62.61
HORVU2Hr1G023120.1	Barley	mitochondrion	65.46	60.09
VIT_06s0080g00440.t01	Wine grape	mitochondrion	42.51	49.3
GSMUA_Achr11P...	Banana	mitochondrion	50.48	48.95
Solyc10g080160.1.1	Tomato	nucleus	45.41	48.83
PGSC0003DMT400060895	Potato	mitochondrion, plastid	45.41	48.7
CDY08108	Canola	mitochondrion	45.17	48.57
CDY05901	Canola	mitochondrion, plastid	44.44	48.04
Bra018009.1-P	Field mustard	mitochondrion	44.69	45.57
KRH24085	Soybean	mitochondrion	44.44	44.77
AT3G49080.1	Thale cress	mitochondrion	45.89	44.19
KRH29054	Soybean	mitochondrion	43.96	43.86
Zm00001d034192_P001	Maize	plastid	13.29	24.55

Protein Annotations

MapMan:17.7.1.2.7	Gene3D:3.30.230.10	UniProt:A0A1D6ILX8	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840
GO:GO:0006412	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009555
GO:GO:0009559	GO:GO:0009987	GO:GO:0019538	GO:GO:0030154	GO:GO:0030529	GO:GO:0048229
InterPro:IPR014721	HAMAP:MF_00532_B	ProteinID:ONM60331.1	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569
PANTHER:PTHR21569:SF1	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid
SUPFAM:SSF54211	UniParc:UPI0008449CA7	EnsemblPlantsGene:Zm00001d022386	EnsemblPlants:Zm00001d022386_P001	EnsemblPlants:Zm00001d022386_T001	SEG:seg

Description

Ribosomal protein S5 domain 2-like superfamily protein

Coordinates

chr7:-:176531871..176537425

Molecular Weight (calculated)

45380.3 Da

IEP (calculated)

5.310

GRAVY (calculated)

-0.631

Length

414 amino acids

Sequence
(BLAST)

001: MLLRRLLHST RHFRHGLRTV TPATTTTTTT TSSSSTPLPF RCFPDLPLSR VLSPRLLSTS GRDDDRNKPW SFEADSGDPD PFANEDAAAA GAAEGPPVGP
101: TRAADKLWAT EFGGEDGENG DVFEGIYKEA ASAAPGRGEA APVGNDEQWT LSGDHEDKDP FAESVLGEGI EGIQGECDGL DDLGAGEDPE VELKRQRNKE
201: REKELMEILK GPNRAFGDLI EASGITDGMI DSLILLKDVR DVPGLPPLRE IEDEAIQNMS VTSSRAEVER QNQEAIAKAR VRQVDEKGRA YGTGKRKCSI
301: ARVWIKPGDG KFIVNEKEFD AYFPILDHRA ELLRPFNVTD TLGRLDVTCT VKGGGVSGQV GAIRLGISRA LENWEPGWRP YLKAAGYLTR DSRVVERKKP
401: GKAKARKSFQ WVKR

Best Arabidopsis Sequence Match ( AT3G49080.1 )
(BLAST)

001: MLSRLFLRHS NLRFVTLVSS KSNSQIFSSF IRPLSTNSSG GGGNGDGNGR NRNDVPWSFT GVNDDKSGPF SSDDSFGSSG VAGSGLPGGE GKWPEEPKRW
101: NIKEEEEKVV FDTGGEVGQG IETSRERRGN EWEETKRWDM KEGEEKVVFG GGGDEVDGFG IRGEVKSNEW DVSKPWNLKE EEEGVVFDTG GEVPFSFENS
201: LEMAEEERVK KELIEKEEKE LLEVIKGPDR AFGDLIAKSG ITDEMLDSLI ALKDFQGVEG LPPLTEIENL RREKSSKKSS RAEIELQMQE DIAKARVRQV
301: DETGRAYGTG RRKCSIARVW IQPGEGKFQV NEKEFDVYFP MLDHRAALLR PLAETKTLGR WDIKCTVKGG GTTGQVGAIQ LGISRALQNW EPDMRTSLRA
401: AGFLTRDSRV VERKKPGKAK ARKSFQWVKR

Arabidopsis Description

RPS9M30S ribosomal protein S9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.