Factsheet for VIT_06s0080g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060895	Potato	mitochondrion, plastid	61.62	56.99
Solyc10g080160.1.1	Tomato	nucleus	61.34	56.88
CDY05901	Canola	mitochondrion, plastid	58.54	54.57
CDY08108	Canola	mitochondrion	57.98	53.77
KRH29054	Soybean	mitochondrion	61.62	53.01
KRH24085	Soybean	mitochondrion	60.22	52.31
Bra018009.1-P	Field mustard	mitochondrion	57.42	50.49
GSMUA_Achr11P...	Banana	mitochondrion	57.42	48.01
Os07t0658200-02	Rice	mitochondrion	53.22	45.78
AT3G49080.1	Thale cress	mitochondrion	54.62	45.35
EER99838	Sorghum	mitochondrion	50.7	43.93
TraesCS2A01G131800.1	Wheat	mitochondrion	54.34	43.5
TraesCS2D01G133900.1	Wheat	mitochondrion	53.78	43.44
TraesCS2B01G154400.1	Wheat	mitochondrion	53.78	43.24
HORVU2Hr1G023120.1	Barley	mitochondrion	53.78	42.57
Zm00001d022386_P001	Maize	mitochondrion	49.3	42.51
VIT_18s0001g11750.t01	Wine grape	plastid	19.61	33.49

Protein Annotations

EntrezGene:100246720	wikigene:100246720	MapMan:17.7.1.2.7	Gene3D:3.30.230.10	UniProt:A5AZM9	EMBL:AM441512
ProteinID:CAN80622	ProteinID:CAN80622.1	ProteinID:CBI28318	ProteinID:CBI28318.3	EMBL:FN595757	GO:GO:0000462
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0019538	GO:GO:0030529	InterPro:IPR014721	EntrezGene:LOC100246720	wikigene:LOC100246720	HAMAP:MF_00532_B
PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF1	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr
InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211	TIGR:TC65084	UniParc:UPI0001523ECE
ArrayExpress:VIT_06s0080g00440	EnsemblPlantsGene:VIT_06s0080g00440	EnsemblPlants:VIT_06s0080g00440.t01	unigene:Vvi.5168	RefSeq:XP_002274146	RefSeq:XP_002274146.1
RefSeq:XP_010651883.1	RefSeq:XP_019076135.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:20413112..20417032

Molecular Weight (calculated)

39884.0 Da

IEP (calculated)

8.633

GRAVY (calculated)

-0.706

Length

357 amino acids

Sequence
(BLAST)

001: MLARFVSKPS NFRLLTLLST KSQSHPPNPK FTLPRFFSTN HNNNDNNTKD RSTFNSWKIS QEYDGNGDSI VGQEAGTLAG LTDEGGAAPA EDESWLKDSP
101: WTFEEEREKG NVLDFGWELQ EEVRAVGGET TIEGDGSKEL LEKEESALSA VLKGPNRAFG DLIAASGITD AMLDSLIALK DLEGVEGLPP LSEIEDIRYE
201: KNTRKSTRAE IERQKQEEVA KARVRQVDEK GRAYGTGRRK CSIARVWVQP GDGKFMINDK QFDVYFPMLD HRAALLRPFS ETKTLGLWDV NCTVKGGGLS
301: GQVGAIRLGI SRALQNWEPG LRPQLREAGF LTRDPRVVER KKPGKAKARK SYQWVKR

Best Arabidopsis Sequence Match ( AT3G49080.1 )
(BLAST)

001: MLSRLFLRHS NLRFVTLVSS KSNSQIFSSF IRPLSTNSSG GGGNGDGNGR NRNDVPWSFT GVNDDKSGPF SSDDSFGSSG VAGSGLPGGE GKWPEEPKRW
101: NIKEEEEKVV FDTGGEVGQG IETSRERRGN EWEETKRWDM KEGEEKVVFG GGGDEVDGFG IRGEVKSNEW DVSKPWNLKE EEEGVVFDTG GEVPFSFENS
201: LEMAEEERVK KELIEKEEKE LLEVIKGPDR AFGDLIAKSG ITDEMLDSLI ALKDFQGVEG LPPLTEIENL RREKSSKKSS RAEIELQMQE DIAKARVRQV
301: DETGRAYGTG RRKCSIARVW IQPGEGKFQV NEKEFDVYFP MLDHRAALLR PLAETKTLGR WDIKCTVKGG GTTGQVGAIQ LGISRALQNW EPDMRTSLRA
401: AGFLTRDSRV VERKKPGKAK ARKSFQWVKR

Arabidopsis Description

RPS9M30S ribosomal protein S9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.