CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29054	Soybean	mitochondrion	88.81	87.95
VIT_06s0080g00440.t01	Wine grape	mitochondrion	52.31	60.22
PGSC0003DMT400060895	Potato	mitochondrion, plastid	54.01	57.51
Solyc10g080160.1.1	Tomato	nucleus	53.53	57.14
CDY05901	Canola	mitochondrion, plastid	50.85	54.57
CDY08108	Canola	mitochondrion	50.85	54.29
Bra018009.1-P	Field mustard	mitochondrion	50.12	50.74
AT3G49080.1	Thale cress	mitochondrion	50.12	47.91
Os07t0658200-02	Rice	mitochondrion	47.2	46.75
EER99838	Sorghum	mitochondrion	46.47	46.36
GSMUA_Achr11P...	Banana	mitochondrion	46.72	44.96
Zm00001d022386_P001	Maize	mitochondrion	44.77	44.44
TraesCS2D01G133900.1	Wheat	mitochondrion	47.2	43.89
TraesCS2B01G154400.1	Wheat	mitochondrion	46.96	43.47
TraesCS2A01G131800.1	Wheat	mitochondrion	46.96	43.27
HORVU2Hr1G023120.1	Barley	mitochondrion	46.96	42.79
KRH15268	Soybean	nucleus	16.06	31.88
KRH05768	Soybean	plastid	15.82	31.4

Protein Annotations

EntrezGene:100796918	MapMan:17.7.1.2.7	Gene3D:3.30.230.10	EMBL:ACUP02007170	EnsemblPlantsGene:GLYMA_12G020800	GO:GO:0000462
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0019538	GO:GO:0030529	UniProt:I1LPC4	InterPro:IPR014721	EnsemblPlants:KRH24085	ProteinID:KRH24085
ProteinID:KRH24085.1	HAMAP:MF_00532_B	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF1
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211
UniParc:UPI000233C2C4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:1492808..1495812

Molecular Weight (calculated)

45991.0 Da

IEP (calculated)

5.341

GRAVY (calculated)

-0.768

Length

411 amino acids

Sequence
(BLAST)

001: MLSRLIPKPS HLRRFLSIPL KPSHTAVNPF FTVVVPKHFS TNRGGGNDGD GKDPFSSRVW KDFRETEEKL DAFFEEEEEC GSLAGMNDDG SSGGRRREER
101: GWLQEEEQGW LQEKGLDDAD EDAIFKGIDE ESGDAGGGGF DESNFGVRAG EDFKPWSMKG EEDDKKDVFD FKEDVGHEGN FTALDINPKV DVEQLEKEEQ
201: ALTAVVKGPK RAFGDLIAAS GITDEMLDSL IALKDFDGVH GLPPLSVIED MRYEKNTRKS TRGEMERLKQ EEAAKARVKQ VDDKGRAYGT GRRKCSVARV
301: WVQPGNGQFT VNDKEFDVYF PMLEHRATLL RPFSETKTLG LWDVDCTVKG GGVSGQVGAI RLGISKALQN WEPDLRPALR NAGFLTRDSR VVERKKPGKA
401: KARKSFQWVK R

Best Arabidopsis Sequence Match ( AT3G49080.1 )
(BLAST)

001: MLSRLFLRHS NLRFVTLVSS KSNSQIFSSF IRPLSTNSSG GGGNGDGNGR NRNDVPWSFT GVNDDKSGPF SSDDSFGSSG VAGSGLPGGE GKWPEEPKRW
101: NIKEEEEKVV FDTGGEVGQG IETSRERRGN EWEETKRWDM KEGEEKVVFG GGGDEVDGFG IRGEVKSNEW DVSKPWNLKE EEEGVVFDTG GEVPFSFENS
201: LEMAEEERVK KELIEKEEKE LLEVIKGPDR AFGDLIAKSG ITDEMLDSLI ALKDFQGVEG LPPLTEIENL RREKSSKKSS RAEIELQMQE DIAKARVRQV
301: DETGRAYGTG RRKCSIARVW IQPGEGKFQV NEKEFDVYFP MLDHRAALLR PLAETKTLGR WDIKCTVKGG GTTGQVGAIQ LGISRALQNW EPDMRTSLRA
401: AGFLTRDSRV VERKKPGKAK ARKSFQWVKR

Arabidopsis Description

RPS9M30S ribosomal protein S9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.