CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15268	Soybean	nucleus	91.3	91.3
Bra003776.1-P	Field mustard	cytosol	60.87	86.9
VIT_18s0001g11750.t01	Wine grape	plastid	78.74	77.99
CDX85870	Canola	plastid	73.43	72.04
Bra015878.1-P	Field mustard	plastid	72.46	71.09
CDX68153	Canola	plastid	72.46	70.75
CDX73129	Canola	plastid	71.98	70.62
AT1G74970.1	Thale cress	plastid	70.05	69.71
CDY64476	Canola	plastid	70.53	68.87
PGSC0003DMT400043484	Potato	mitochondrion, plastid	68.12	67.14
GSMUA_Achr2P17190_001	Banana	plastid	70.53	66.06
Solyc04g079790.2.1	Tomato	plastid	67.63	59.07
EER90823	Sorghum	plastid	60.87	56.25
Os03t0769100-01	Rice	plastid	58.94	54.71
TraesCS5A01G404500.1	Wheat	plastid	59.42	54.67
Zm00001d034192_P001	Maize	plastid	58.94	54.46
TraesCS5B01G409400.1	Wheat	plastid	59.42	54.42
TraesCS5D01G414600.1	Wheat	plastid	58.94	54.22
HORVU5Hr1G098340.3	Barley	plastid	57.97	45.11
KRH24085	Soybean	mitochondrion	31.4	15.82
KRH29054	Soybean	mitochondrion	31.4	15.66

Protein Annotations

EntrezGene:100305975	MapMan:17.7.2.2.9	Gene3D:3.30.230.10	EMBL:ACUP02010781	EMBL:BT089844	UniProt:C6SXF0
EnsemblPlantsGene:GLYMA_17G247300	GO:GO:0000312	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009536	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR014721
ProteinID:KRH05767.1	EnsemblPlants:KRH05768	ProteinID:KRH05768	ProteinID:KRH05768.1	ProteinID:KRH05769.1	ProteinID:KRH05770.1
HAMAP:MF_00532_B	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF11	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211	UniParc:UPI0001B152C3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:40277052..40280175

Molecular Weight (calculated)

22610.3 Da

IEP (calculated)

10.831

GRAVY (calculated)

-0.223

Length

207 amino acids

Sequence
(BLAST)

001: MAVSLSALTT SLSSLSFSSH ISQRPNTLSF ARTESLSVSV SRFPKTPSSL VVSATALAEP ETEDLKNYVK SRLPGGFAAQ TIIGTGRRKS AIARVVLQEG
101: TGKFIINYRD AKEYLQGNPL WLQYIKVPLI TLGYESNYDV FVKAEGGGLS GQAQAISLGI ARALLKVSED HRVPLRQEGL LTRDSRVVER KKVGLKKARK
201: APQYSKR

Best Arabidopsis Sequence Match ( AT1G74970.1 )
(BLAST)

001: MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE
101: GTGKVIINYR DAKEYLQGNP LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG LLTRDARVVE RKKAGLKKAR
201: KAPQFSKR

Arabidopsis Description

RPS930S ribosomal protein S9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.