CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003776.1-P	Field mustard	cytosol	51.34	79.31
Zm00001d034192_P001	Maize	plastid	79.02	79.02
TraesCS5B01G409400.1	Wheat	plastid	78.12	77.43
TraesCS5A01G404500.1	Wheat	plastid	77.68	77.33
TraesCS5D01G414600.1	Wheat	plastid	77.23	76.89
Os03t0769100-01	Rice	plastid	74.55	74.89
CDX85870	Canola	plastid	60.71	64.45
Bra015878.1-P	Field mustard	plastid	60.71	64.45
CDX73129	Canola	plastid	60.27	63.98
CDX68153	Canola	plastid	59.38	62.74
AT1G74970.1	Thale cress	plastid	58.04	62.5
VIT_18s0001g11750.t01	Wine grape	plastid	58.04	62.2
CDY64476	Canola	plastid	58.48	61.79
KRH05768	Soybean	plastid	56.25	60.87
KRH15268	Soybean	nucleus	55.8	60.39
HORVU5Hr1G098340.3	Barley	plastid	71.43	60.15
GSMUA_Achr2P17190_001	Banana	plastid	58.48	59.28
PGSC0003DMT400043484	Potato	mitochondrion, plastid	54.91	58.57
Solyc04g079790.2.1	Tomato	plastid	54.91	51.9
EER99838	Sorghum	mitochondrion	26.79	14.56

Protein Annotations

MapMan:17.7.2.2.9	Gene3D:3.30.230.10	EntrezGene:8083964	UniProt:C5WZ87	EnsemblPlants:EER90823	ProteinID:EER90823
ProteinID:EER90823.1	GO:GO:0000312	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020
GO:GO:0019538	GO:GO:0030529	InterPro:IPR014721	HAMAP:MF_00532_B	PFAM:PF00380	ScanProsite:PS00360
PANTHER:PTHR21569	PANTHER:PTHR21569:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS
InterPro:Ribosomal_S9_bac/plastid	EnsemblPlantsGene:SORBI_3001G076500	SUPFAM:SSF54211	UniParc:UPI0001A82289	RefSeq:XP_002463825.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:5884102..5886855

Molecular Weight (calculated)

24321.6 Da

IEP (calculated)

10.825

GRAVY (calculated)

-0.208

Length

224 amino acids

Sequence
(BLAST)

001: MALSVSSLAA ALSHLSLPST STSKPHPAPL LRLRSTSRRA VSLALRASAA EAAEPSEADL PVEEVVAVEE EAEEDALSGI ALRKYVKQRL PGGFAAQRIT
101: ATGRRKTAIA RVVLQEGTGK VFINFRDAKE YLQGNPMWME YCKVPLMTLG FENNYDVFVK VHGGGLSGQA QAICLGVARA LVKISNANRV PLKSEGLLTR
201: DTRIVERKKA GLKKARKRPQ FSKR

Best Arabidopsis Sequence Match ( AT1G74970.1 )
(BLAST)

001: MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE
101: GTGKVIINYR DAKEYLQGNP LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG LLTRDARVVE RKKAGLKKAR
201: KAPQFSKR

Arabidopsis Description

RPS930S ribosomal protein S9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.