Factsheet for GSMUA_Achr2P17190_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003776.1-P	Field mustard	cytosol	57.01	86.9
KRH15268	Soybean	nucleus	66.52	71.01
VIT_18s0001g11750.t01	Wine grape	plastid	66.97	70.81
KRH05768	Soybean	plastid	66.06	70.53
CDX68153	Canola	plastid	66.52	69.34
AT1G74970.1	Thale cress	plastid	64.71	68.75
CDY64476	Canola	plastid	65.61	68.4
CDX73129	Canola	plastid	65.16	68.25
CDX85870	Canola	plastid	65.16	68.25
Bra015878.1-P	Field mustard	plastid	64.25	67.3
PGSC0003DMT400043484	Potato	mitochondrion, plastid	60.18	63.33
EER90823	Sorghum	plastid	59.28	58.48
Os03t0769100-01	Rice	plastid	58.37	57.85
TraesCS5D01G414600.1	Wheat	plastid	57.47	56.44
TraesCS5B01G409400.1	Wheat	plastid	57.47	56.19
TraesCS5A01G404500.1	Wheat	plastid	57.01	56.0
Solyc04g079790.2.1	Tomato	plastid	59.73	55.7
Zm00001d034192_P001	Maize	plastid	56.11	55.36
HORVU5Hr1G098340.3	Barley	plastid	54.75	45.49
GSMUA_Achr11P...	Banana	mitochondrion	30.77	15.93

Protein Annotations

MapMan:17.7.2.2.9	Gene3D:3.30.230.10	GO:GO:0000312	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr2G17190_001
EnsemblPlants:GSMUA_Achr2P17190_001	EnsemblPlants:GSMUA_Achr2T17190_001	InterPro:IPR014721	UniProt:M0S8R0	HAMAP:MF_00532_B	PFAM:PF00380
ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9
InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211	UniParc:UPI000296529D	SEG:seg	:

Description

30S ribosomal protein S9, chloroplastic (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G17190_001]

Coordinates

chr2:-:17814920..17819249

Molecular Weight (calculated)

24018.1 Da

IEP (calculated)

11.439

GRAVY (calculated)

-0.205

Length

221 amino acids

Sequence
(BLAST)

001: MATTSLSSLT VAFSSLSFSS HVSSSNKTLY SPWIRRRRTA SPLRWNSPTA IASSTTSFPI VAVSGGAAVS AEDLEGVSLE KYVKSRLPGG FAAQRLIGTG
101: RRKCAIARVV LQEGTGKFVI NYRDAKEYLQ GNPLWLQYIK TPLLTLGFES SYDVFVKAQG GGLSGQAQAI SLGIARALLK VSQNHRSPLK KEGLLTRDSR
201: IVERKKVGLK KARKAPQFSK R

Best Arabidopsis Sequence Match ( AT1G74970.1 )
(BLAST)

001: MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE
101: GTGKVIINYR DAKEYLQGNP LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG LLTRDARVVE RKKAGLKKAR
201: KAPQFSKR

Arabidopsis Description

RPS930S ribosomal protein S9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.