Factsheet for Solyc04g079790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043484	Potato	mitochondrion, plastid	86.5	97.62
Bra003776.1-P	Field mustard	cytosol	50.63	82.76
VIT_18s0001g11750.t01	Wine grape	plastid	61.18	69.38
CDX68153	Canola	plastid	61.18	68.4
CDX85870	Canola	plastid	60.76	68.25
KRH15268	Soybean	nucleus	59.49	68.12
Bra015878.1-P	Field mustard	plastid	60.34	67.77
CDX73129	Canola	plastid	60.34	67.77
KRH05768	Soybean	plastid	59.07	67.63
CDY64476	Canola	plastid	59.92	66.98
AT1G74970.1	Thale cress	plastid	58.65	66.83
GSMUA_Achr2P17190_001	Banana	plastid	55.7	59.73
TraesCS5A01G404500.1	Wheat	plastid	52.74	55.56
TraesCS5D01G414600.1	Wheat	plastid	52.32	55.11
EER90823	Sorghum	plastid	51.9	54.91
TraesCS5B01G409400.1	Wheat	plastid	52.32	54.87
Zm00001d034192_P001	Maize	plastid	50.21	53.12
Os03t0769100-01	Rice	plastid	49.37	52.47
HORVU5Hr1G098340.3	Barley	plastid	49.37	43.98
Solyc10g080160.1.1	Tomato	nucleus	27.0	16.62

Protein Annotations

MapMan:17.7.2.2.9	Gene3D:3.30.230.10	GO:GO:0000312	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941
GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0030529	InterPro:IPR014721	UniProt:K4BV58
HAMAP:MF_00532_B	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF11	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211	EnsemblPlantsGene:Solyc04g079790.2
EnsemblPlants:Solyc04g079790.2.1	UniParc:UPI00027673A9	SEG:seg	:	:	:

Description

30S ribosomal protein S9, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G74970) UniProtKB/Swiss-Prot;Acc:Q9XJ27]

Coordinates

chr4:-:64117020..64119625

Molecular Weight (calculated)

26296.8 Da

IEP (calculated)

10.733

GRAVY (calculated)

-0.192

Length

237 amino acids

Sequence
(BLAST)

001: MAISVASLAS SFASLSFSSQ ISQKPYAVSL AHSKQFSFSL ASKISTLVVS ASVAEAPETE ELETRENLLK LVKSRLPGGF AAQPIFGTGR RKSASARVVL
101: QEGSGKIIIN YRDAKEYLQG NPLWIQYVKT PLATLGYEAS YDIFVKVEGG GLSGQAQAIS LGIARALLKV SESHRKPLRE EGLLTRDARV VERKKVGLKK
201: ARKRPQFSKR WYLLTVAAFG RKIWWFIDPD WEKRAYQ

Best Arabidopsis Sequence Match ( AT1G74970.1 )
(BLAST)

001: MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE
101: GTGKVIINYR DAKEYLQGNP LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG LLTRDARVVE RKKAGLKKAR
201: KAPQFSKR

Arabidopsis Description

RPS930S ribosomal protein S9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.