Factsheet for Solyc10g080160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060895	Potato	mitochondrion, plastid	97.4	97.15
VIT_06s0080g00440.t01	Wine grape	mitochondrion	56.88	61.34
KRH24085	Soybean	mitochondrion	57.14	53.53
KRH29054	Soybean	mitochondrion	56.1	52.05
CDY05901	Canola	mitochondrion, plastid	51.69	51.96
CDY08108	Canola	mitochondrion	51.95	51.95
Bra018009.1-P	Field mustard	mitochondrion	51.95	49.26
Os07t0658200-02	Rice	mitochondrion	51.95	48.19
AT3G49080.1	Thale cress	mitochondrion	53.77	48.14
EER99838	Sorghum	mitochondrion	50.39	47.09
Zm00001d022386_P001	Maize	mitochondrion	48.83	45.41
TraesCS2D01G133900.1	Wheat	mitochondrion	51.95	45.25
TraesCS2B01G154400.1	Wheat	mitochondrion	51.95	45.05
GSMUA_Achr11P...	Banana	mitochondrion	49.87	44.96
TraesCS2A01G131800.1	Wheat	mitochondrion	51.43	44.39
HORVU2Hr1G023120.1	Barley	mitochondrion	51.95	44.35
Solyc04g079790.2.1	Tomato	plastid	16.62	27.0

Protein Annotations

MapMan:17.7.1.2.7	Gene3D:3.30.230.10	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009555	GO:GO:0009559	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0030154	GO:GO:0030529	GO:GO:0048229	InterPro:IPR014721
UniProt:K4D2Q7	HAMAP:MF_00532_B	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF1
InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211
EnsemblPlantsGene:Solyc10g080160.1	EnsemblPlants:Solyc10g080160.1.1	UniParc:UPI0002769330	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:61533449..61538163

Molecular Weight (calculated)

43194.0 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.719

Length

385 amino acids

Sequence
(BLAST)

001: MLSRFISKSS HLRLLTLISP KTHFINPKPI SPKPYLFPHF FSTRNNNNNN NSNGRNSDPD FWKLSSETEQ SVFNEDSESV EGIGKDDVSW GNVEEESGDV
101: FKEAGEVKDG VGGGEEIWAT AEGYKPWSFD AEGEGERVFD IGEDVKVESE LMGSEEEAKI QSAEEKKLLE LEEQVLTGVL KGPNRAFGDL IAASGITDEM
201: MDSLLALKDL DGIKGLPPLS EIEDMRYEKN TRKSSRADIE RQKQEEVAKA RVKQVDEKGR AYGTGRRKCS IARVWVEPGG GKFMVNDKEF DVYFPMLDHR
301: AVLLRPFTET KTLGMWNVRC TVKGGGVSGQ VGAIQLGISR ALQNWDPELR PPLREGGYLT RDSRVVERKK PGKAKARKSY QWVKR

Best Arabidopsis Sequence Match ( AT3G49080.1 )
(BLAST)

001: MLSRLFLRHS NLRFVTLVSS KSNSQIFSSF IRPLSTNSSG GGGNGDGNGR NRNDVPWSFT GVNDDKSGPF SSDDSFGSSG VAGSGLPGGE GKWPEEPKRW
101: NIKEEEEKVV FDTGGEVGQG IETSRERRGN EWEETKRWDM KEGEEKVVFG GGGDEVDGFG IRGEVKSNEW DVSKPWNLKE EEEGVVFDTG GEVPFSFENS
201: LEMAEEERVK KELIEKEEKE LLEVIKGPDR AFGDLIAKSG ITDEMLDSLI ALKDFQGVEG LPPLTEIENL RREKSSKKSS RAEIELQMQE DIAKARVRQV
301: DETGRAYGTG RRKCSIARVW IQPGEGKFQV NEKEFDVYFP MLDHRAALLR PLAETKTLGR WDIKCTVKGG GTTGQVGAIQ LGISRALQNW EPDMRTSLRA
401: AGFLTRDSRV VERKKPGKAK ARKSFQWVKR

Arabidopsis Description

RPS9M30S ribosomal protein S9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.