CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG21735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49080.1	KXG21735	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022386_P001	Maize	mitochondrion	84.95	84.54
Os07t0658200-02	Rice	mitochondrion	73.54	73.01
TraesCS2D01G133900.1	Wheat	mitochondrion	71.6	66.74
TraesCS2A01G131800.1	Wheat	mitochondrion	71.84	66.37
TraesCS2B01G154400.1	Wheat	mitochondrion	71.36	66.22
HORVU2Hr1G023120.1	Barley	mitochondrion	69.42	63.41
VIT_06s0080g00440.t01	Wine grape	mitochondrion	43.93	50.7
GSMUA_Achr11P...	Banana	mitochondrion	52.43	50.59
Solyc10g080160.1.1	Tomato	nucleus	47.09	50.39
PGSC0003DMT400060895	Potato	mitochondrion, plastid	46.84	50.0
CDY08108	Canola	mitochondrion	45.15	48.31
CDY05901	Canola	mitochondrion, plastid	44.66	48.04
KRH24085	Soybean	mitochondrion	46.36	46.47
KRH29054	Soybean	mitochondrion	46.6	46.27
Bra018009.1-P	Field mustard	mitochondrion	44.9	45.57
AT3G49080.1	Thale cress	mitochondrion	45.63	43.72
EER90823	Sorghum	plastid	14.56	26.79

Protein Annotations

MapMan:17.7.1.2.7	Gene3D:3.30.230.10	EntrezGene:8072244	UniProt:C5X466	ncoils:Coil	EnsemblPlants:EER99838
ProteinID:EER99838	ProteinID:EER99838.1	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009555	GO:GO:0009559	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0030154	GO:GO:0030529	GO:GO:0048229	InterPro:IPR014721
HAMAP:MF_00532_B	PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF1	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	EnsemblPlantsGene:SORBI_3002G402500	SUPFAM:SSF54211
unigene:Sbi.2003	UniParc:UPI0001A83F1D	RefSeq:XP_002463317.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:75270249..75274859

Molecular Weight (calculated)

44653.4 Da

IEP (calculated)

5.848

GRAVY (calculated)

-0.570

Length

412 amino acids

Sequence
(BLAST)

001: MLLRRLLHSS RHIQHGLRTV TPATSAASSS SSSSPFAFRR LPDLVPSRVL SPRLLSTSGR DDDRNKPWNF AADSGDPDPF ANEDAAAAGA VEGPTVRSTR
101: AADEPWAAGF GGEDGDNGDV FEGIYKEAAS AAPARGVAAP AGNDEQWTLS GDDEEKDPFA AAVLGEGIEG IQSEGAGLDD LDAGEDPDDE LKRQQNKARE
201: KELMEILKGP NRAFGDLIAA SGITEGMIDS LILLKDVRDI PGLPPLSEIE DEAIQKLNAT SSRAEVERQK QEDIAKARVR QVDEKGRAYG TGKRKCSIAR
301: VWIEPGDGKF IVNEKEFDAY FPILDHRAEL LRPFTVTKNL GHFNVTCTVK GGGVSGQVGA IRLGISRALQ NWEPGLRPYL KAAGYLTRDS RVVERKKPGK
401: AKARKSFQWV KR

Best Arabidopsis Sequence Match ( AT3G49080.1 )
(BLAST)

001: MLSRLFLRHS NLRFVTLVSS KSNSQIFSSF IRPLSTNSSG GGGNGDGNGR NRNDVPWSFT GVNDDKSGPF SSDDSFGSSG VAGSGLPGGE GKWPEEPKRW
101: NIKEEEEKVV FDTGGEVGQG IETSRERRGN EWEETKRWDM KEGEEKVVFG GGGDEVDGFG IRGEVKSNEW DVSKPWNLKE EEEGVVFDTG GEVPFSFENS
201: LEMAEEERVK KELIEKEEKE LLEVIKGPDR AFGDLIAKSG ITDEMLDSLI ALKDFQGVEG LPPLTEIENL RREKSSKKSS RAEIELQMQE DIAKARVRQV
301: DETGRAYGTG RRKCSIARVW IQPGEGKFQV NEKEFDVYFP MLDHRAALLR PLAETKTLGR WDIKCTVKGG GTTGQVGAIQ LGISRALQNW EPDMRTSLRA
401: AGFLTRDSRV VERKKPGKAK ARKSFQWVKR

Arabidopsis Description

RPS9M30S ribosomal protein S9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.