Factsheet for PGSC0003DMT400060895

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080160.1.1	Tomato	nucleus	97.15	97.4
VIT_06s0080g00440.t01	Wine grape	mitochondrion	56.99	61.62
KRH24085	Soybean	mitochondrion	57.51	54.01
KRH29054	Soybean	mitochondrion	56.74	52.77
CDY05901	Canola	mitochondrion, plastid	51.3	51.7
CDY08108	Canola	mitochondrion	51.55	51.69
Bra018009.1-P	Field mustard	mitochondrion	51.55	49.01
Os07t0658200-02	Rice	mitochondrion	51.81	48.19
AT3G49080.1	Thale cress	mitochondrion	53.37	47.91
EER99838	Sorghum	mitochondrion	50.0	46.84
GSMUA_Achr11P...	Banana	mitochondrion	50.52	45.67
Zm00001d022386_P001	Maize	mitochondrion	48.7	45.41
TraesCS2D01G133900.1	Wheat	mitochondrion	51.55	45.02
TraesCS2B01G154400.1	Wheat	mitochondrion	51.55	44.82
TraesCS2A01G131800.1	Wheat	mitochondrion	51.04	44.17
HORVU2Hr1G023120.1	Barley	mitochondrion	51.55	44.12
PGSC0003DMT400043484	Potato	mitochondrion, plastid	17.1	31.43

Protein Annotations

EntrezGene:102587067	MapMan:17.7.1.2.7	Gene3D:3.30.230.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005840	GO:GO:0006412	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009555	GO:GO:0009559	GO:GO:0009987	GO:GO:0019538	GO:GO:0030154	GO:GO:0030529
GO:GO:0048229	InterPro:IPR014721	UniProt:M1C6M4	HAMAP:MF_00532_B	PFAM:PF00380	EnsemblPlantsGene:PGSC0003DMG400023687
PGSC:PGSC0003DMG400023687	EnsemblPlants:PGSC0003DMT400060895	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF1	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211	UniParc:UPI000296AB05
RefSeq:XP_006351315.1	SEG:seg	:	:	:	:

Description

Ribosomal protein S9 [Source:PGSC_GENE;Acc:PGSC0003DMG400023687]

Coordinates

chr10:+:57709648..57716044

Molecular Weight (calculated)

43353.0 Da

IEP (calculated)

5.921

GRAVY (calculated)

-0.789

Length

386 amino acids

Sequence
(BLAST)

001: MLSRFISKSS HLRLLTLISP KTHFINPKPI SPKPYLFPHF FSTRNNNNNN NNSNGRNSDP DFWKLSSETE QSVFNEDSES VEGIGKDDVS WANGEEESGD
101: VFKEAGEVKG GVGGGEEIWA TAEGYKPWSF DAEGEGERVF DIGEDVKVES EMRGSEEEDK RQSAEEKKLL ELEEQVLTGV LKGPNRAFGD LIAASGITDE
201: MMDSLLALKD LDGIKGLPPL SEIEDMRYEK NTRKSTRGDI ERQKQEEVAK ARVKQVDEKG RAYGTGRRKC SIARVWVEPG GGKFMVNDKE FDVYFPMLDH
301: RAVLLRPFTE TKTLGMWDVR CTVKGGGVSG QVGAIQLGIS RALQNWDPEL RPPLREGGYL TRDSRVVERK KPGKAKARKS YQWVKR

Best Arabidopsis Sequence Match ( AT3G49080.1 )
(BLAST)

001: MLSRLFLRHS NLRFVTLVSS KSNSQIFSSF IRPLSTNSSG GGGNGDGNGR NRNDVPWSFT GVNDDKSGPF SSDDSFGSSG VAGSGLPGGE GKWPEEPKRW
101: NIKEEEEKVV FDTGGEVGQG IETSRERRGN EWEETKRWDM KEGEEKVVFG GGGDEVDGFG IRGEVKSNEW DVSKPWNLKE EEEGVVFDTG GEVPFSFENS
201: LEMAEEERVK KELIEKEEKE LLEVIKGPDR AFGDLIAKSG ITDEMLDSLI ALKDFQGVEG LPPLTEIENL RREKSSKKSS RAEIELQMQE DIAKARVRQV
301: DETGRAYGTG RRKCSIARVW IQPGEGKFQV NEKEFDVYFP MLDHRAALLR PLAETKTLGR WDIKCTVKGG GTTGQVGAIQ LGISRALQNW EPDMRTSLRA
401: AGFLTRDSRV VERKKPGKAK ARKSFQWVKR

Arabidopsis Description

RPS9M30S ribosomal protein S9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Z4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.