Factsheet for VIT_18s0001g11750.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003776.1-P	Field mustard	cytosol	64.59	93.1
KRH05768	Soybean	plastid	77.99	78.74
KRH15268	Soybean	nucleus	77.03	77.78
CDX73129	Canola	plastid	76.08	75.36
CDX85870	Canola	plastid	76.08	75.36
CDX68153	Canola	plastid	76.08	75.0
Bra015878.1-P	Field mustard	plastid	75.6	74.88
CDY64476	Canola	plastid	75.6	74.53
AT1G74970.1	Thale cress	plastid	72.25	72.6
PGSC0003DMT400043484	Potato	mitochondrion, plastid	68.9	68.57
GSMUA_Achr2P17190_001	Banana	plastid	70.81	66.97
Solyc04g079790.2.1	Tomato	plastid	69.38	61.18
EER90823	Sorghum	plastid	62.2	58.04
Os03t0769100-01	Rice	plastid	61.24	57.4
TraesCS5D01G414600.1	Wheat	plastid	60.77	56.44
TraesCS5A01G404500.1	Wheat	plastid	60.29	56.0
Zm00001d034192_P001	Maize	plastid	59.81	55.8
TraesCS5B01G409400.1	Wheat	plastid	60.29	55.75
HORVU5Hr1G098340.3	Barley	plastid	57.89	45.49
VIT_06s0080g00440.t01	Wine grape	mitochondrion	33.49	19.61

Protein Annotations

EntrezGene:100248841	wikigene:100248841	MapMan:17.7.2.2.9	Gene3D:3.30.230.10	UniProt:A5BPF9	EMBL:AM466554
ProteinID:CAN79164	ProteinID:CAN79164.1	ProteinID:CBI19625	ProteinID:CBI19625.3	EMBL:FN595227	GO:GO:0000312
GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538
GO:GO:0030529	InterPro:IPR014721	EntrezGene:LOC100248841	wikigene:LOC100248841	HAMAP:MF_00532_B	PFAM:PF00380
ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF11	InterPro:Ribosomal_S5_D2-typ_fold	InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9
InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211	TIGR:TC54987	UniParc:UPI0001524978	ArrayExpress:VIT_18s0001g11750
EnsemblPlantsGene:VIT_18s0001g11750	EnsemblPlants:VIT_18s0001g11750.t01	unigene:Vvi.9416	RefSeq:XP_002283650	RefSeq:XP_002283650.1	SEG:seg

Description

No Description!

Coordinates

chr18:-:10033256..10037422

Molecular Weight (calculated)

22514.4 Da

IEP (calculated)

11.069

GRAVY (calculated)

-0.093

Length

209 amino acids

Sequence
(BLAST)

001: MAISMSSLTS SLSSLSFSSH ISQRPSSLSF VRSNSLSISH LTKTSSLAVV ASAAAVASPL ELETADLKKY VKSRLPGGFA AQTIIGTGRR KCAIARVVLQ
101: EGTGKVIINY RDAKEYLQGN PLWLQYVKVP LVTLGYESSY DVFVKAHGGG LSGQAQAISL GIARALLKVS EDHRGPLRKE GLLTRDSRVV ERKKVGLKKA
201: RKAPQFSKR

Best Arabidopsis Sequence Match ( AT1G74970.1 )
(BLAST)

001: MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE
101: GTGKVIINYR DAKEYLQGNP LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG LLTRDARVVE RKKAGLKKAR
201: KAPQFSKR

Arabidopsis Description

RPS930S ribosomal protein S9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.