Factsheet for Os03t0769100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 10359080

nucleus: 19621931
plastid: 21433289

gfp PMID: 10359080 doi

S Arimura, S Takusagawa, S Hatano, M Nakazono, A Hirai, N Tsutsumi

Laboratory of Radiation Genetics, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Japan.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003776.1-P	Field mustard	cytosol	50.67	77.93
EER90823	Sorghum	plastid	74.89	74.55
TraesCS5B01G409400.1	Wheat	plastid	73.09	72.12
TraesCS5D01G414600.1	Wheat	plastid	72.65	72.0
TraesCS5A01G404500.1	Wheat	plastid	72.65	72.0
Zm00001d034192_P001	Maize	plastid	69.51	69.2
VIT_18s0001g11750.t01	Wine grape	plastid	57.4	61.24
AT1G74970.1	Thale cress	plastid	56.5	60.58
CDY64476	Canola	plastid	56.5	59.43
CDX68153	Canola	plastid	56.5	59.43
Bra015878.1-P	Field mustard	plastid	56.05	59.24
KRH05768	Soybean	plastid	54.71	58.94
CDX85870	Canola	plastid	55.61	58.77
GSMUA_Achr2P17190_001	Banana	plastid	57.85	58.37
CDX73129	Canola	plastid	55.16	58.29
KRH15268	Soybean	nucleus	53.36	57.49
HORVU5Hr1G098340.3	Barley	plastid	66.82	56.02
PGSC0003DMT400043484	Potato	mitochondrion, plastid	52.47	55.71
Solyc04g079790.2.1	Tomato	plastid	52.47	49.37
Os07t0658200-02	Rice	mitochondrion	27.35	14.7

Protein Annotations

MapMan:17.7.2.2.9	Gene3D:3.30.230.10	EntrezGene:4334247	ProteinID:AAR87317.1	ProteinID:AAT85048.1	EMBL:AB022675
ProteinID:ABF99071.1	EMBL:AK068283	EMBL:AK104434	ProteinID:BAF13308.1	ProteinID:BAS86576.1	GO:GO:0000312
GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536
GO:GO:0009987	GO:GO:0019538	InterPro:IPR014721	HAMAP:MF_00532_B	EnsemblPlantsGene:Os03g0769100	EnsemblPlants:Os03t0769100-01
PFAM:PF00380	ScanProsite:PS00360	PANTHER:PTHR21569	PANTHER:PTHR21569:SF11	UniProt:Q9XJ28	InterPro:Ribosomal_S5_D2-typ_fold
InterPro:Ribosomal_S5_D2-typ_fold_subgr	InterPro:Ribosomal_S9	InterPro:Ribosomal_S9_CS	InterPro:Ribosomal_S9_bac/plastid	SUPFAM:SSF54211	UniParc:UPI00000AD005
RefSeq:XP_015628866.1	SEG:seg	:	:	:	:

Description

RIBOSOMAL PROTEIN S9Similar to 9S ribosomal protein. (Os03t0769100-01);Non-protein coding transcript. (Os03t0769100-02)

Coordinates

chr3:-:31845466..31847238

Molecular Weight (calculated)

24243.4 Da

IEP (calculated)

10.781

GRAVY (calculated)

-0.193

Length

223 amino acids

Sequence
(BLAST)

001: MALSLTTAFS HLSLPSTSKF HPLPLLHLRF PSSSSSRRAA RLALAASAAE AAEPVEVEEA PAEDGADEVV AVEDELSGPA LRKYVKQRLP GGFAAQRITA
101: TGRRKTAIAR VVLQEGTGRV FINFRDAKEY LQGNPMWMEY CKVPLVTLGF ENSYDVFVKV HGGGLSGQAQ AICLGVARAL VKISTANKVT LRGEGLLTRD
201: TRIVERKKAG LKKARKRPQF SKR

Best Arabidopsis Sequence Match ( AT1G74970.1 )
(BLAST)

001: MASITNLASS LSSLSFSSQV SQRPNTISFP RANSVFALPA KSARRASLSI TATVSAPPEE EEIVELKKYV KSRLPGGFAA QKIIGTGRRK CAIARVVLQE
101: GTGKVIINYR DAKEYLQGNP LWLQYVKVPL VTLGYENSYD IFVKAHGGGL SGQAQAITLG VARALLKVSA DHRSPLKKEG LLTRDARVVE RKKAGLKKAR
201: KAPQFSKR

Arabidopsis Description

RPS930S ribosomal protein S9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.