CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04480.1	CDX70151	AT5G05410.1	18552202
AT3G04480.1	CDX98843	AT5G05410.1	18552202
AT3G04480.1	CDY04950	AT5G05410.1	18552202
AT3G04480.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42929	Canola	plasma membrane	91.3	91.69
VIT_14s0036g00840.t01	Wine grape	cytosol	9.82	90.91
CDX74189	Canola	plasma membrane	88.36	87.5
CDX92070	Canola	plasma membrane	87.94	86.72
AT3G04480.1	Thale cress	plasma membrane	85.55	84.96
CDY20689	Canola	extracellular	19.21	84.57
PGSC0003DMT400049176	Potato	cytosol	27.21	64.45
Solyc04g010080.2.1	Tomato	cytosol	61.99	60.63
KRG94883	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	61.85	59.51
PGSC0003DMT400029925	Potato	plasma membrane	61.71	58.12
GSMUA_Achr10P...	Banana	peroxisome	57.78	57.7
Os02t0810450-01	Rice	cytosol, nucleus, peroxisome	54.56	53.07
TraesCS6D01G362600.1	Wheat	peroxisome	53.86	52.24
VIT_14s0036g00850.t01	Wine grape	mitochondrion	56.66	52.13
KXG31325	Sorghum	cytosol, nucleus, peroxisome	53.3	52.13
TraesCS6B01G415800.1	Wheat	peroxisome	53.02	51.85
HORVU6Hr1G088800.8	Barley	peroxisome	53.3	51.7
TraesCS6A01G378100.1	Wheat	peroxisome	52.31	50.75
Zm00001d018439_P003	Maize	cytosol	49.37	46.32

Protein Annotations

MapMan:17.5.2.2.6	Gene3D:3.30.1330.40	Gene3D:3.40.50.620	Gene3D:3.90.1490.10	UniProt:A0A078IIW4	EnsemblPlants:CDY49334
ProteinID:CDY49334	ProteinID:CDY49334.1	InterPro:DPH6/MJ0570	InterPro:Diphthami_syn_dom	EnsemblPlantsGene:GSBRNA2T00092871001	InterPro:IPR014729
InterPro:IPR035959	PFAM:PF01042	PFAM:PF01902	PANTHER:PTHR12196	MetaCyc:PWY-6482	MetaCyc:PWY-7546
InterPro:Rossmann-like_a/b/a_fold	InterPro:RutC-like_sf	SUPFAM:SSF52402	SUPFAM:SSF55298	TIGRFAMs:TIGR00290	UniPathway:UPA00559
UniParc:UPI0004EE0D2C	InterPro:YjgF/YER057c/UK114	SEG:seg	:	:	:

Description

BnaA05g32960DBnaA05g32960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIW4]

Coordinates

chrLK032826:+:36175..39545

Molecular Weight (calculated)

79701.2 Da

IEP (calculated)

5.095

GRAVY (calculated)

-0.166

Length

713 amino acids

Sequence
(BLAST)

001: MKVVALVSGG KDSCYVMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQIIVSYA ECMNVPLFRR RIRGSSSRHQ KLSYQMTPDD EVEDLFVLLS
101: EVKRQIPSIT AVSSGAIASD YQRLRVESIC SRLGLVSLAF LWKQDQTLLL QEMIANGIKA ILVKVAAIGL DPSKHLGRDL AFMEPHLLKL KEIYGSNVCG
201: EGGEYETLTL DCPLFTNARI VLDEFEVKLH SPDSIAPVGV LHPTVFHLEK KGDPDSNSLE KEPGLVFEVQ GDGPSTPDST RQRDSGTVEH TRNRVHLSKT
301: GKENTFSICC WLEDSSQSST GLREDLETVL TETESQLLKQ GFNWQNVLYI HLYISDMSEF AVANETYVKF ITHEKCPFGV PSRSTIELPL VQAGLGKAYV
401: EVLVANDQSK RVLHVQSISS WAPSCIGPYS QATLHKGVLH MAGQLGLDPP TMNLRNEGAI AELDQALKNS EAIAEAFRCS ISSSAILFVV FCSARTEQSE
501: RDQLHEKFVS FLDLAKSSRR VLDPMFLYIL VPDLPKRALV EVKPVLYVEE DSETEDETRQ DQFGEGDYGC WGYKPEEWYQ DCVQKRVIDG KICVTVLSIS
601: AEVMKKLHEP EEEQELERVT RFCVYLLNKT LSENSFSWQD TTSLRIHFST SLGVSVKRLS NIFETAFKEL NEMSHGGRVA KEPIFNLVPV LGAGNSSASL
701: HNVITCELFS LRS

Best Arabidopsis Sequence Match ( AT3G04480.1 )
(BLAST)

001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS

Arabidopsis Description

Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.