Factsheet for PGSC0003DMT400049176

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g010080.2.1	Tomato	cytosol	80.4	33.2
PGSC0003DMT400029925	Potato	plasma membrane	80.4	31.97
Bra040191.1-P	Field mustard	plasma membrane	65.45	27.67
KRG94883	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	67.77	27.53
CDX92070	Canola	plasma membrane	65.78	27.39
CDY49334	Canola	plasma membrane	64.45	27.21
CDY42929	Canola	plasma membrane	64.12	27.18
AT3G04480.1	Thale cress	plasma membrane	64.78	27.16
Bra001106.1-P	Field mustard	plasma membrane	64.78	27.12
CDX74189	Canola	plasma membrane	64.78	27.08
GSMUA_Achr10P...	Banana	peroxisome	64.12	27.03
KXG31325	Sorghum	cytosol, nucleus, peroxisome	62.46	25.79
TraesCS6B01G415800.1	Wheat	peroxisome	61.79	25.51
Os02t0810450-01	Rice	cytosol, nucleus, peroxisome	62.13	25.51
HORVU6Hr1G088800.8	Barley	peroxisome	62.13	25.44
TraesCS6D01G362600.1	Wheat	peroxisome	62.13	25.44
TraesCS6A01G378100.1	Wheat	peroxisome	61.79	25.31
VIT_14s0036g00850.t01	Wine grape	mitochondrion	64.12	24.9
Zm00001d018439_P003	Maize	cytosol	61.79	24.47
CDY20689	Canola	extracellular	2.99	5.56
PGSC0003DMT400049180	Potato	cytosol	1.0	2.78

Protein Annotations

MapMan:17.5.2.2.6	Gene3D:3.30.1330.40	Gene3D:3.40.50.620	Gene3D:3.90.1490.10	ncoils:Coil	InterPro:DPH6/MJ0570
InterPro:Diphthami_syn_dom	InterPro:IPR014729	InterPro:IPR035959	UniProt:M1BND0	PFAM:PF01042	PFAM:PF01902
EnsemblPlantsGene:PGSC0003DMG400019115	PGSC:PGSC0003DMG400019115	EnsemblPlants:PGSC0003DMT400049176	PANTHER:PTHR12196	InterPro:Rossmann-like_a/b/a_fold	InterPro:RutC-like_sf
SUPFAM:SSF52402	SUPFAM:SSF55298	TIGRFAMs:TIGR00290	UniParc:UPI0002956881	InterPro:YjgF/YER057c/UK114	SEG:seg

Description

Endoribonuclease [Source:PGSC_GENE;Acc:PGSC0003DMG400019115]

Coordinates

chr10:+:49928337..49931112

Molecular Weight (calculated)

33922.3 Da

IEP (calculated)

6.501

GRAVY (calculated)

0.068

Length

301 amino acids

Sequence
(BLAST)

001: MLNAWDSHYS GGEFKDPQGK PFCSQLPVSS GAIASDYQRL RVESVCSMLG LVSLAYLWKQ DQSFLLQEMI RNGIIAIAVK VAAVGLNPSQ HLGKEIAYLE
101: PHLHKLKELY GINVCGEGGE YETLTLDCPL FKANLQEDLE VVLMRIEALL VENGSSWENV LYIHLYIADM DEFVVANETY VRFITQEKCR YGVPSRSTIE
201: LPLLLVGFGR AYIEVLVAND PTKKVLHVQS ISCWAPSCIG PYSQATLHNE ILHMAGQLGL TQQLCCSVKK VLLRNLNRHW KTVKQLLEAL TVQYLHQPWF
301: L

Best Arabidopsis Sequence Match ( AT3G04480.1 )
(BLAST)

001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS

Arabidopsis Description

Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.