Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
- plastid 1
- extracellular 2
- golgi 2
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g010080.2.1 | Tomato | cytosol | 93.92 | 97.53 |
| PGSC0003DMT400049180 | Potato | cytosol | 13.08 | 91.67 |
| PGSC0003DMT400049176 | Potato | cytosol | 31.97 | 80.4 |
| CDY42929 | Canola | plasma membrane | 59.05 | 62.96 |
| Bra040191.1-P | Field mustard | plasma membrane | 58.52 | 62.22 |
| KRG94883 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 60.9 | 62.21 |
| Bra001106.1-P | Field mustard | plasma membrane | 59.05 | 62.17 |
| AT3G04480.1 | Thale cress | plasma membrane | 58.92 | 62.12 |
| CDX74189 | Canola | plasma membrane | 59.05 | 62.08 |
| CDX92070 | Canola | plasma membrane | 59.05 | 61.83 |
| CDY49334 | Canola | plasma membrane | 58.12 | 61.71 |
| GSMUA_Achr10P... | Banana | peroxisome | 55.35 | 58.68 |
| CDY20689 | Canola | extracellular | 12.15 | 56.79 |
| VIT_14s0036g00850.t01 | Wine grape | mitochondrion | 57.6 | 56.26 |
| Os02t0810450-01 | Rice | cytosol, nucleus, peroxisome | 52.18 | 53.89 |
| KXG31325 | Sorghum | cytosol, nucleus, peroxisome | 51.65 | 53.64 |
| TraesCS6B01G415800.1 | Wheat | peroxisome | 51.12 | 53.09 |
| TraesCS6D01G362600.1 | Wheat | peroxisome | 51.12 | 52.65 |
| HORVU6Hr1G088800.8 | Barley | peroxisome | 50.99 | 52.52 |
| TraesCS6A01G378100.1 | Wheat | peroxisome | 50.99 | 52.52 |
| Zm00001d018439_P003 | Maize | cytosol | 47.69 | 47.5 |
Protein Annotations
| EntrezGene:102584229 | MapMan:17.5.2.2.6 | Gene3D:3.30.1330.40 | Gene3D:3.40.50.620 | Gene3D:3.90.1490.10 | InterPro:Diphthami_syn_dom |
| InterPro:IPR014729 | InterPro:IPR035959 | UniProt:M1ATJ6 | PFAM:PF01042 | PFAM:PF01902 | EnsemblPlantsGene:PGSC0003DMG400011494 |
| PGSC:PGSC0003DMG400011494 | EnsemblPlants:PGSC0003DMT400029925 | InterPro:Rossmann-like_a/b/a_fold | InterPro:RutC-like_sf | SUPFAM:SSF52402 | SUPFAM:SSF55298 |
| TIGRFAMs:TIGR00290 | UniParc:UPI00029582BC | InterPro:YjgF/YER057c/UK114 | SEG:seg | : | : |
Description
Endoribonuclease [Source:PGSC_GENE;Acc:PGSC0003DMG400011494]
Coordinates
chr4:+:6351685..6361300
Molecular Weight (calculated)
84132.8 Da
IEP (calculated)
5.201
GRAVY (calculated)
0.076
Length
757 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLIPADDAT DELDSYMYQT VGHQIVVSYA KCMGLPLFRR RIQGSTRHHD LSYSMTPGDE VEDMFILLKE
101: VKRQIPSVTA VSSGAIASDY QRLRVESVCS RLGLVSLAYL WKQDQSFLLQ EMIRNGIIAI AVKVAAIGLN PSKHLGKEIA YLEPHLHKLK EYDMVSKIFG
201: FVLLHFFRIF MSLFGRLYGI NVCGEGGEYE TLTLDCPLFK NARIVLDEFQ IVLHSPDTIA PVGILHPLAF HLENKVESIS SNGIDEASNL DTVFEVEGDV
301: QQEGEAASEF VAIRSERSGV TKQELKVSKT MKDNVFSISC WLQDSSKNSS DLQEDLEVIL MRIEALLMEN GSSWENVLYI HLYIADMDEF AVANETYVRF
401: ITQEKCRYGV PSRSTIELPL LLVGLGRAYI EVLVANDPTK KVLHVQSISC WAPSCIGPYS QATLHNEILH MAGQLGLDPA TMLLCEGGPV AELEQALENS
501: EAVARSFNCS ISTSAMVFVI YCSESVEKSE RIIVQKKTET LLKQMKSNHA DGTKKSKVLD PIFLYVLVPD LPKRALVEVK PMFYTGEYLS GPSDLTKQSQ
601: STEQDYCGHD ISLQKCVAYG KICTVILSVT EGLAAKICSL ASVACPANVM SKGLVEKEQV ILIARFCISR LDKVLSENNF SWDDIMNFRL YFASNLNFSH
701: GTLSEIFSDV FNELVQMSRR NKVDAEPILN IVPVLGAGRS LSTLDDIFTC ELIASKC
101: VKRQIPSVTA VSSGAIASDY QRLRVESVCS RLGLVSLAYL WKQDQSFLLQ EMIRNGIIAI AVKVAAIGLN PSKHLGKEIA YLEPHLHKLK EYDMVSKIFG
201: FVLLHFFRIF MSLFGRLYGI NVCGEGGEYE TLTLDCPLFK NARIVLDEFQ IVLHSPDTIA PVGILHPLAF HLENKVESIS SNGIDEASNL DTVFEVEGDV
301: QQEGEAASEF VAIRSERSGV TKQELKVSKT MKDNVFSISC WLQDSSKNSS DLQEDLEVIL MRIEALLMEN GSSWENVLYI HLYIADMDEF AVANETYVRF
401: ITQEKCRYGV PSRSTIELPL LLVGLGRAYI EVLVANDPTK KVLHVQSISC WAPSCIGPYS QATLHNEILH MAGQLGLDPA TMLLCEGGPV AELEQALENS
501: EAVARSFNCS ISTSAMVFVI YCSESVEKSE RIIVQKKTET LLKQMKSNHA DGTKKSKVLD PIFLYVLVPD LPKRALVEVK PMFYTGEYLS GPSDLTKQSQ
601: STEQDYCGHD ISLQKCVAYG KICTVILSVT EGLAAKICSL ASVACPANVM SKGLVEKEQV ILIARFCISR LDKVLSENNF SWDDIMNFRL YFASNLNFSH
701: GTLSEIFSDV FNELVQMSRR NKVDAEPILN IVPVLGAGRS LSTLDDIFTC ELIASKC
001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
Arabidopsis Description
Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.