Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G221900.1 | |
| TraesCS1B01G235100.2 | |
| TraesCS1D01G223600.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04480.1 | TraesCS1A01G221900.1 | AT5G05410.1 | 18552202 |
| AT3G04480.1 | TraesCS1B01G235100.2 | AT5G05410.1 | 18552202 |
| AT3G04480.1 | TraesCS1D01G223600.2 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G362600.1 | Wheat | peroxisome | 95.34 | 94.56 |
| HORVU6Hr1G088800.8 | Barley | peroxisome | 94.79 | 94.01 |
| TraesCS6A01G378100.1 | Wheat | peroxisome | 94.1 | 93.33 |
| Os02t0810450-01 | Rice | cytosol, nucleus, peroxisome | 78.74 | 78.31 |
| KXG31325 | Sorghum | cytosol, nucleus, peroxisome | 76.41 | 76.41 |
| Zm00001d018439_P003 | Maize | cytosol | 71.19 | 68.29 |
| PGSC0003DMT400049176 | Potato | cytosol | 25.51 | 61.79 |
| VIT_14s0036g00840.t01 | Wine grape | cytosol | 6.17 | 58.44 |
| GSMUA_Achr10P... | Banana | peroxisome | 55.97 | 57.14 |
| Bra001106.1-P | Field mustard | plasma membrane | 52.81 | 53.55 |
| AT3G04480.1 | Thale cress | plasma membrane | 52.67 | 53.48 |
| CDX74189 | Canola | plasma membrane | 52.81 | 53.47 |
| Solyc04g010080.2.1 | Tomato | cytosol | 53.09 | 53.09 |
| CDY49334 | Canola | plasma membrane | 51.85 | 53.02 |
| CDY42929 | Canola | plasma membrane | 51.58 | 52.96 |
| Bra040191.1-P | Field mustard | plasma membrane | 51.71 | 52.95 |
| CDX92070 | Canola | plasma membrane | 52.4 | 52.84 |
| PGSC0003DMT400029925 | Potato | plasma membrane | 53.09 | 51.12 |
| KRG94883 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 50.75 | 49.93 |
| CDY20689 | Canola | extracellular | 8.5 | 38.27 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G415800.1 | EnsemblPlantsGene:TraesCS6B01G415800 | Gene3D:3.30.1330.40 | Gene3D:3.40.50.620 | Gene3D:3.90.1490.10 | InterPro:DPH6/MJ0570 |
| InterPro:Diphthami_syn_dom | InterPro:IPR014729 | InterPro:IPR035959 | InterPro:Rossmann-like_a/b/a_fold | InterPro:RutC-like_sf | InterPro:YjgF/YER057c/UK114 |
| PANTHER:PTHR12196 | PFAM:PF01042 | PFAM:PF01902 | SEG:seg | SUPFAM:SSF52402 | SUPFAM:SSF55298 |
| TIGR:cd01994 | TIGR:cd06156 | TIGRFAMs:TIGR00290 | MapMan:17.5.2.2.6 | : | : |
Description
No Description!
Coordinates
chr6B:+:688298315..688302495
Molecular Weight (calculated)
78748.1 Da
IEP (calculated)
5.370
GRAVY (calculated)
0.055
Length
729 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVVALVSGG KDSCFSMMRC LDYGHKVVAL ANLVPLDDAV DELDSYMYQT VGHQIVVCYA KCMGLPLFRR RISGSTRDHA LKYSVTAGDE VEDMFALLSE
101: VKRRIPSIGA VSSGAIASDY QRLRVESVCS RLGLVSLAYM WRQDQTLLLE EMIRRGIVAI TVKVAAMGLK PSVHLGKELA ELKSHLLQMN ESFGINVCGE
201: GGEYETLTLD CPLFRNARIV LDDFEVILHS ADSIASVGIL HPLAFHVEPK PGSSSSIGDG VIAQENSSCL YEVNGAIAHT DAEDKQTLNP TPTYDAYPNT
301: NLHISKTGKS LFSIGCWIEE PSSASQGMKA DLVKVLSRIE NQLKDGGLSW ANVVYVHLYI SSMKEFGLAN EVYVSFITEQ KCHLGVPSRS TIELPLVQAG
401: LGHAYVEVLV SNDLVKRVLH VQSISCWAPS CIGPYSQATL YGEILYMAGQ LGLDPPTMKL CPGGATAQLE LALRNSEAVA NAFKSSIFSS AIHFLVYCSA
501: HLTSTEKEAV EQKLQNSYIA HLDSARSGSY PTILYVLAPD LPKGACVEIK PILYVPADDY NDNDDDGDIT REPEAGGSKP SPSKVLSEWS AQYSALHDSC
601: CLVNTVAGKI CSAVVSVTND IASKICPSTE QSHPSKEHLK AIARFCAFQL AKTLADNGFS WDDVTMLRFY YSVKQAAAAD AMSRAFHEAF AELGGAAGAP
701: VFNLIPVSGS GRSASMDDVV TCELLASKA
101: VKRRIPSIGA VSSGAIASDY QRLRVESVCS RLGLVSLAYM WRQDQTLLLE EMIRRGIVAI TVKVAAMGLK PSVHLGKELA ELKSHLLQMN ESFGINVCGE
201: GGEYETLTLD CPLFRNARIV LDDFEVILHS ADSIASVGIL HPLAFHVEPK PGSSSSIGDG VIAQENSSCL YEVNGAIAHT DAEDKQTLNP TPTYDAYPNT
301: NLHISKTGKS LFSIGCWIEE PSSASQGMKA DLVKVLSRIE NQLKDGGLSW ANVVYVHLYI SSMKEFGLAN EVYVSFITEQ KCHLGVPSRS TIELPLVQAG
401: LGHAYVEVLV SNDLVKRVLH VQSISCWAPS CIGPYSQATL YGEILYMAGQ LGLDPPTMKL CPGGATAQLE LALRNSEAVA NAFKSSIFSS AIHFLVYCSA
501: HLTSTEKEAV EQKLQNSYIA HLDSARSGSY PTILYVLAPD LPKGACVEIK PILYVPADDY NDNDDDGDIT REPEAGGSKP SPSKVLSEWS AQYSALHDSC
601: CLVNTVAGKI CSAVVSVTND IASKICPSTE QSHPSKEHLK AIARFCAFQL AKTLADNGFS WDDVTMLRFY YSVKQAAAAD AMSRAFHEAF AELGGAAGAP
701: VFNLIPVSGS GRSASMDDVV TCELLASKA
001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
Arabidopsis Description
Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.