Factsheet for Bra001106.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
plastid 1
extracellular 2
golgi 2
plasma membrane 3
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005852.1-P
Bra009112.1-P
Bra028759.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04480.1	Bra005852.1-P	AT5G05410.1	18552202
AT3G04480.1	Bra009112.1-P	AT5G05410.1	18552202
AT3G04480.1	Bra028759.1-P	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74189	Canola	plasma membrane	100.0	99.86
VIT_14s0036g00840.t01	Wine grape	cytosol	9.6	89.61
Bra040191.1-P	Field mustard	plasma membrane	87.07	87.92
AT3G04480.1	Thale cress	plasma membrane	85.54	85.65
PGSC0003DMT400049176	Potato	cytosol	27.12	64.78
Solyc04g010080.2.1	Tomato	cytosol	62.59	61.73
KRG94883	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	61.47	59.65
PGSC0003DMT400029925	Potato	plasma membrane	62.17	59.05
GSMUA_Achr10P...	Banana	peroxisome	58.41	58.82
Os02t0810450-01	Rice	cytosol, nucleus, peroxisome	54.52	53.48
TraesCS6D01G362600.1	Wheat	peroxisome	54.24	53.06
VIT_14s0036g00850.t01	Wine grape	mitochondrion	57.16	53.03
TraesCS6B01G415800.1	Wheat	peroxisome	53.55	52.81
HORVU6Hr1G088800.8	Barley	peroxisome	53.82	52.65
KXG31325	Sorghum	cytosol, nucleus, peroxisome	53.13	52.4
TraesCS6A01G378100.1	Wheat	peroxisome	52.85	51.7
Zm00001d018439_P003	Maize	cytosol	49.79	47.11

Protein Annotations

MapMan:17.5.2.2.6	Gene3D:3.30.1330.40	Gene3D:3.40.50.620	Gene3D:3.90.1490.10	EnsemblPlantsGene:Bra001106	EnsemblPlants:Bra001106.1
EnsemblPlants:Bra001106.1-P	InterPro:DPH6/MJ0570	InterPro:Diphthami_syn_dom	InterPro:IPR014729	InterPro:IPR035959	UniProt:M4CA77
PFAM:PF01042	PFAM:PF01902	PANTHER:PTHR12196	InterPro:Rossmann-like_a/b/a_fold	InterPro:RutC-like_sf	SUPFAM:SSF52402
SUPFAM:SSF55298	TIGRFAMs:TIGR00290	UniParc:UPI0002540956	InterPro:YjgF/YER057c/UK114	:	:

Description

AT3G04480 (E=0.0) | endoribonuclease

Coordinates

chrA03:-:14771553..14774671

Molecular Weight (calculated)

80021.7 Da

IEP (calculated)

4.977

GRAVY (calculated)

-0.105

Length

719 amino acids

Sequence
(BLAST)

001: MKVVALVSGG KDSCYVMMKC LQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQIIVSYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ EMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPHLLKLK ELYGSNVCGE
201: GGEYETLTLD CPLFTNARIV LDEFEVKLHS PDSIAPVGVL HPTIFHLEKK GNTDSNSVEE EPGLVFEVQG DGPNTTEATR QVDNGIVDHT RTRVNLSKTG
301: KDNTFSICCW LEDSSESSTG LKQDLESVLT EIESQLSKHA FNWKNVLYIH LYISDMSEFA AANETYVKFI TQEKCFFGVP SRSTIELPLV QAGLGKAYVE
401: VLVANDHSKR VLHVQSISSW APSCIGPYSQ ATLHKGVLHM AGQLGLDPPT MNLRKEGAVA ELNQALTNSE AIAEAFRCSI TSSAILFVVF CSERTQQSER
501: NQLHEKFVSF LDLAKSSWRV SNVMDPIFLY ILVPDLPKSA LVEVKPVLYV KEDSEDDDET RKDQLGEGDF SCWGYKPEKW HQDCLQTRVV DGKICVNVLS
601: ISAEVMKKLD EPSGDEEQQL KRVSRFCVYL LNKTLSENSF SWQDTTSLRI HFSTSLGVSV ERLSDIFETA FKVLNEMSGG VIFNGLKEPI FNLVPVLGAG
701: NSSASLDNII TCELFSLRS

Best Arabidopsis Sequence Match ( AT3G04480.1 )
(BLAST)

001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS

Arabidopsis Description

Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.